Amnah Siddiqa's Projects
https://amnahsiddiqa.github.io/2020-12-02-amnahsiddiqa/
:coffee: Free and open-source Jekyll theme
TestAnalysis
Config files for my GitHub profile.
A beautiful, simple, clean, and responsive Jekyll theme for academics
Ordering patients on smooth manifolds using lineage estimation tools
Scraps of my codes and hence of my life from here and there !
Master thesis work in Politecnico di Milano regarding gene clustering using deep autoencoders. [2017]
An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
Reproducible workflows for the data analysis of "Baseline" project
A compilation of Linux server benchmarking scripts.
Just a Dockerfile to launch sneumann/bioc_notebooks w/o time-consuming build on binder
build and push Bioconductor annotation packages
Authoring Books and Technical Documents with R Markdown
Hands-on tutorial on Nextflow and Containers (Docker and Singularity). Paris 2018.
For my personal use ;
Tests for running nf-core pipelines on scale
A collection of common mz values found in mass spectrometry.
Tools for Managing SSH and Git Credentials
This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.
A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍
Pipeline to fetch metadata and raw FastQ files from public databases
CloudThingies--SettingupSDKandFirebaseForProjects
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent