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Andreas Tiffeau-Mayer's Projects

crispr_repertoires icon crispr_repertoires

Source code associated with the paper 'A scaling law in CRISPR repertoire sizes arises from avoidance of autoimmunity'

easyleed icon easyleed

Software for Low Energy Electron Diffraction I(E)-spectra analysis

evolimmune icon evolimmune

Source code accompanying the paper "Diversity of immune strategies explained by adaptation to pathogen statistics"

international-covid-ifr icon international-covid-ifr

Age-specific mortality and immunity patterns of SARS-CoV-2 https://www.nature.com/articles/s41586-020-2918-0

mise icon mise

public mise ( http://en.wikipedia.org/wiki/Mise_en_place )

noisyopt icon noisyopt

Python library for optimizing noisy functions.

olga icon olga

Compute generation probabilities of CDR3 amino acid and nucleotide sequences

optimmune icon optimmune

Source code accompanying the paper "How a well-adapted immune system is organized"

paper-bayesimmune icon paper-bayesimmune

Source code accompanying the paper "How a well-adapting immune system remembers"

paper-tcellexp icon paper-tcellexp

Source code accompanying the paper "Regulation of T cell expansion by antigen presentation dynamics "

paper-tcellimprint icon paper-tcellimprint

Source code accompanying the paper "Early life imprints the hierarchy of T cell clone sizes"

paper_coincidences icon paper_coincidences

Source code accompanying the paper "Measures of epitope binding degeneracy from T cell receptor repertoires "

peptidome icon peptidome

Self/non-self discrimination as a statistical problem

pomegranate icon pomegranate

Fast, flexible and easy to use probabilistic modelling in Python.

projgrad icon projgrad

Projected gradient optimization in python

pydiver icon pydiver

Ecological diversity analysis in python

pyneqsys icon pyneqsys

Solve symbolically defined systems of non-linear equations numerically.

pyrepseq icon pyrepseq

Python library for immune repertoire analysis

scipy icon scipy

Scipy library main repository

scipydirect icon scipydirect

Python wrapper to the DIRECT global optimization algorithm with scipy.optimize compatible call syntax

shablona icon shablona

A template for small scientific python projects

sonia icon sonia

Infer selection pressures on features of amino acid CDR3 sequences.

tcr-dist icon tcr-dist

Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)

transitions-paper icon transitions-paper

Source code accompanying the paper "Transitions in optimal adaptive strategies for populations in fluctuating environments"

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