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Working in R&D focusing on deep learning, computer vision, large language models, software development, and statistical analysis.

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Selected open-source projects within medicine and other applications

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keras

tensorflow

torch

python

R

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latex

pycharm

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Visual Studio Code

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André Pedersen's Projects

adverse-events icon adverse-events

IEEE BIBM 2021: Bayesian optimization-guided topic modeling for automatic detection of sepsis-related events from free text

aeropath icon aeropath

🫁 AeroPath: An airway segmentation benchmark dataset with challenging pathology

airway icon airway

Automatic classification of tertiary bronchi based on bronchus masks using a rule-based approach.

annotationweb icon annotationweb

A web-based annnotation system for easy annotation of image sequences such as ultrasound and camera recordings

anthropic-cookbook icon anthropic-cookbook

A collection of notebooks/recipes showcasing some fun and effective ways of using Claude.

ants icon ants

Advanced Normalization Tools (ANTs)

antspynet icon antspynet

Medical image analysis framework merging ANTsPy and deep learning

atg-nlp icon atg-nlp

Code relevant for training and evaluating multi-task NLPs from free text using TensorFlow

atm-22-related-work icon atm-22-related-work

[MICCAI, 2022, Challenge]: Airway Tree Modeling (ATM'22) Related Work Collections, also includes the state-of-the-art works on pulmonary airway segmentation and related works.

autogen icon autogen

A programming framework for agentic AI. Discord: https://aka.ms/autogen-dc. Roadmap: https://aka.ms/autogen-roadmap

autopool icon autopool

Adaptive pooling operators for multiple instance learning

awesome-cv icon awesome-cv

:page_facing_up: Awesome CV is LaTeX template for your outstanding job application

awesome-healthcare icon awesome-healthcare

Curated list of awesome open source healthcare software, libraries, tools and resources.

balancedgroupsoftmax icon balancedgroupsoftmax

CVPR 2020 oral paper: Overcoming Classifier Imbalance for Long-tail Object Detection with Balanced Group Softmax.

bci icon bci

BCI: Breast Cancer Immunohistochemical Image Generation through Pyramid Pix2pix

bcss icon bcss

Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourcing enables convolutional segmentation of histology images. Bioinformatics. 2019. doi: 10.1093/bioinformatics/btz083

brainchop icon brainchop

Brainchop: In-browser 3D MRI rendering and segmentation

breast-cancer-stats icon breast-cancer-stats

:cherry_blossom: Tutorials for making publish-worthy visualizations using WHO breast cancer data

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