andrese52 Goto Github PK

2013-khmer-counting

Paper code: "These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure"

andrese52

Config files for my GitHub profile.

andrese52-academic

basecalling-comparison

A comparison of different Oxford Nanopore basecallers

bash-oneliner

Bash Oneliner learning station. This blog will focus on bash commands for parsing biological data, which are tsv files(tab-separated values); some of the commands are for Ubuntu system maintaining. I apologize that there won't be any citation of the code, but they are probably from dear Google and Stackoverflow. Not all the code here are oneliner (if the ';' counts..). English and bash are not my first language, so... correct me anytime, tks!!

bfg-repo-cleaner

Removes large or troublesome blobs like git-filter-branch does, but faster. And written in Scala

camisim

CAMISIM: Simulating metagenomes and microbial communities

diamondsingularity

Example of Singularity container

docker-diamond

Docker file to install diamond and use it

ednatran

epp_workshop_web

introduction_to_ml_with_python

Notebooks and code for the book "Introduction to Machine Learning with Python"

khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

main

markdown-here

Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

meghna-hugo

Meghna Hugo Template

metagenomics-workshop

Metagenomics Workshop Overview

nimffab.io

oneliners

Useful bash one-liners for bioinformatics.

rstudio

customized rstudio in docker

soapdenovo2

Next generation sequencing reads de novo assembler.

startbootstrap-sb-admin-2

A free, open source, Bootstrap admin theme created by Start Bootstrap

training_datasets_scripting

This is a set of basic datasets for a bioinformatics workshop organized in the Entomology and Plant Pathology Department at Oklahoma State University