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My Projects in Ecology and Biodiversity Science

I am a long-term ecologist working at the intersection of evidence-based approaches, long-term biodiversity responses to environmental change, and functional programming.

Tools and Libraries
Bristlecone Bristlecone is an F# library for model-fitting model-selection (MFMS) of ecological models to observational data. The library was developed for tree ring analysis, but can be used for other time-series modelling problems. docs
Ecoset Ecoset is a simple and flexible typescript app to serve geo-temporal datasets using tools such as GDAL.
Thalloo Thalloo (pronounced tol-oo) is a template for geographical mapping and data exploration of systematic maps and systematic reviews. As a Jekyll template, the starter template may be used to make a github pages static site for exploring evidence maps. Starter template
RProvider (Maintainer) RProvider is an interop layer for F# to R for scientific computing. docs
Web Apps
Global Pollen Project The Global Pollen Project is a web app for paleoecology. It aids the digitisation of pollen reference material and crowdsourced identification of unidentified pollen grains. globalpollenproject.org
Local Ecological Footprint Tool The Local Ecological Footprint Tool (LEFT) is a web-based decision support tool which can help businesses minimise the environmental impacts of their activities when they make decisions about how land is used. left.ox.ac.uk marineleft.ox.ac.uk

Andrew Martin's Projects

bristlecone icon bristlecone

An F# library for mechanistic modelling of ecological time series data

cottongrass icon cottongrass

Sharing of ideas / consultations in multiple languages

deedle icon deedle

Easy to use .NET library for data and time series manipulation and for scientific programming

ecoset icon ecoset

A flexible application for serving geospatial datasets

fsharplu icon fsharplu

This library provides a set of F# helpers for string manipulations, logging, collection data structures, file operations, text processing, security, async, parsing, diagnostics, configuration files and Json serialization.

gdm icon gdm

R package for Generalized Dissimilarity Modeling

global-pollen-project icon global-pollen-project

The Global Pollen Project is a web application for the digitisation of pollen reference material, and the crowdsourced identification of unknown pollen grains.

global-pollen-project_archive icon global-pollen-project_archive

The Global Pollen Project is a web application for the digitisation of pollen reference material, and the crowdsourced identification of unknown pollen grains.

lab-webpage-on-umbraco icon lab-webpage-on-umbraco

This Umbraco template was created to be used as the basis for our lab website (oxlel.zoo.ox.ac.uk).

local-ecological-footprinting-tool icon local-ecological-footprinting-tool

The Local Ecological Footprinting Tool (LEFT), is a web-based decision support tool which can help businesses minimise the environmental impacts of their activities when they make decisions about how land is used.

nunatak icon nunatak

A lightweight and precise system for reproducible data science

phantom icon phantom

A modified version of the ghost casper theme

pipemethodcalls icon pipemethodcalls

Lightweight library for method calls over named pipes for IPC in .NET Core. Supports two-way communication with callbacks.

rdotnet icon rdotnet

.NET interop library to call the R statistical language in the same process

thalloo icon thalloo

A simple, static framework for visualising geo-temporal datasets

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