anj-prog Goto Github PK

2019-single-cell-rna-sequencing-workshop-ucd_ucsf

2019 single cell RNA sequencing Workshop @ UCD AND UCSF

advanced-r-programming

Course on Advanced R Programming (Johns Hopkins University)

anj-prog

Config files for my GitHub profile.

appsr

APPSR: automated preprocessing pipeline for meta-analysis of small RNA sequencing data.

audicmethod

RNAseq analysis without replicate

bioicons

A library of free open source icons for science illustrations in biology and chemistry

book_omic_association

Material of the book "Omic association studies with R/Bioconductor"

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

cornas

CORNAS is a fast method for reliable DEG calls in unreplicated conditions.

cornas_supporting_data

corr_meta

Supplementary script for meta-analysis primer

counttofpkm

Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)

cufflinks

dart_vadar

fundamentals-of-r-programming-and-statistical-analysis

Fundamentals of R Programming and Statistical Analysis [video], published by Packt

galaxy

Data intensive science for everyone.

galaxy-rna-workbench

Galaxy RNA workbench

go

The Open Source Data Science Masters

knowledgebase

recipes that save time

litsearchr

litsearchr is an R package to partially automate search term selection for systematic reviews using keyword co-occurrence networks. In addition to identifying search terms, it can write Boolean searches and translate them into over 50 languages.

metagear

:exclamation: This is a read-only mirror of the CRAN R package repository. metagear — Comprehensive Research Synthesis Tools for Systematic Reviews and Meta-Analysis. Homepage: http://lajeunesse.myweb.usf.edu https://github.com/mjlajeunesse

msu_ngs2015

DE analysis module for Week3

ngs-pipeline

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

orgm

A Fiji macro for measuring organoid area and size

pagoda2

R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

powershell

PowerShell for every system!

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

pubmedr

Gathering metadata about publications, patents, grants, clinical trials and policy documents from PubMed database

pydock_tutorial

PyDock Tutorial