ssh codon-login # use your credentials
store important permanent data under /nfs/research/irene/YOURUSERNAME
run jobs, store intermediate outputs that you dont need for long term here : /hps/nobackup/irene/ma/YOURUSERNAME
cd /hps/nobackup/irene/ma
mkdir YOURUSERNAME
cd /hps/software/users/ma/
mkdir YOURUSERNAME
navigate in codon:
cd /nfs/research/irene/YOURUSERNAME
bsub -n 8 -q datamover "/hps/software/copytools/msrsync/msrsync -p 8 /nfs/yoda/leia/research/ma/YOURUSERNAME /nfs/research/irene/
#the above command will use 8 cores, the datamover queue and it will move the whole directory YOURUSERNAME from yoda to codon.
Follow the instructions here : To install conda download the installer script from https://docs.conda.io/en/latest/miniconda.html and follow the instructions https://conda.io/projects/conda/en/latest/user-guide/install/linux.html
install miniconda under : /hps/software/users/ma/YOURUSERNAME
Once miniconda is installed in codon go to yoda
conda info --envs # prints the environments you have on yoda- select which ones you use and you want to move to codon
mkdir yml_files
conda activate base
bsub -M 1200 -n 4 conda env export > yml_files/base.yml
conda deactivate
bsub -n 8 -q datamover "/hps/software/copytools/msrsync/msrsync -p 8 /nfs/yoda/leia/research/ma/YOURUSERNAME/yml_files /hps/software/users/ma/YOURUSERNAME/
cd /hps/software/users/ma/YOURUSERNAME/
conda env create -f yml_files/base.yml
conda activate base
conda list