Comments (1)
You'll likely be able to train the model using AlphaFold's initial training settings (256 crop size, 128 MSA sequences, 1024 extra MSA sequences), which work even on our 11GB 2080 Ti's. You'll probably need to keep the "clear_cache_between_blocks" option enabled in the extra MSA stack, which comes with a minor performance hit. Training on the full finetuning settings, though (crops of size 384, extra MSAs of size 5120, etc.) is currently out of the question with just 12GB. We're working on fused or low-memory versions of components of the model, so that may change in the future, but even then, 12 GB will probably be a stretch. Of course, the model is fully configurable, so you may also reduce the numbers of blocks, etc., if you want.
from openfold.
Related Issues (20)
- Unable to load openfold packages HOT 3
- Question : Any plans to support apple silicon Mac M1/M2/M3 ? HOT 2
- Finetune from AF parameters HOT 10
- Inference error using precomputed alignments
- Pickling error in Docker? HOT 1
- Is the pdb_mmcif.zip from OpenProteinSet on AWS suitable for RODA training data? HOT 1
- Finetune from AF_Multimer parameters HOT 5
- Unable to create conda environment HOT 5
- I notice there is only instructions for a Linux Install, can I run this on my Windows laptop? HOT 1
- Frequently failed in training. HOT 2
- Rigid.from_3_points comment HOT 1
- Colab broken by version skew HOT 1
- Docker build broken HOT 4
- Question: Can the geometry module and rigid_utils be converted to each other?
- Alignment error during inference HOT 1
- ModuleNotFoundError: No module named 'attn_core_inplace_cuda' HOT 3
- Enable Dropout in inference HOT 1
- Questions about the meaning of folder naming conventions in OpenProteinSet HOT 1
- ModuleNotFoundError: No module named 'attn_core_inplace_cuda' HOT 1
- RuntimeError: Error building extension 'evoformer_attn' HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from openfold.