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amplicon-ngs-prep

Aquarium Amplicon NGS Prep: An Aquarium Workflow

aq-barcode-readers

A library for handling barcode readers

aq-compositions

composition libraries

aq-genome-center

Workflows for the aquarium genome center

aq-liquid-handling-robots

A library for liquid handling robots

aq-react

New react-app shell for aquarium rebuild

aq-search-prototype

Python-based prototype for Aquarium search

aq-small-instruments

Small instrument classes. E.g. Centrifuges, Pipettors, Shakers etc

aquadoc

A tool for generating documentation for Aquarium workflows

aquadoc-v2

A tool for generating documentation for Aquarium workflows

aquarium

The Aquarium Lab Operating System

aquarium-deployment-template

consolidated repository for deployment scripts

aquarium-local

Docker configuration for running Aquarium with a local (non-deployment) configuration

aquarium-multiple-deployment

Configuration for running multiple Aquaria

aquarium-opil

Python interface for using OPIL with Aquarium

aquarium-provenance

A Python package for provenance of samples in Aquarium runs

aquariumbio.github.io

home of the Aquarium.bio organization page

collection-management

A series of libraries for managing and controlling collection and samples inside of collections

containers

A container that tracks the volume of items.

covid-sample-ingest

Python scripts for ingesting samples for the Covid19 surveillance testing workflow

covid19-test

COVID-19 Molecular Diagnostics: An Aquarium Workflow

cuttlefish

dashboard for projects in aquarium

devcontainer-template

experiment-request

Python package for describing experiments

hot-swap-db

A python script for swapping SQL databases in a Dockerized Aquarium instance

inventory-prototype-rails

Prototype app for new inventory model

inventory-prototype-react

kits

Kits or groups of items that come as a kit

krill-blockly

A not-entirely-reasonable idea of how writing Aquarium protocols should be.

krill-service

Independent krill service