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araikes's Projects

brkraw icon brkraw

BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data

ccod icon ccod

Comprehensive Concussion Outcomes Database

dabestr icon dabestr

Data Analysis with Bootstrap Estimation in R

datameta icon datameta

An R package to create and append a data dictionary for an R dataset

dipy icon dipy

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

dose_meta icon dose_meta

Meta-analysis of dose and timing of stroke rehabilitation based on the SCOAR database

micapipe icon micapipe

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

mriqc icon mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

mrtrix3 icon mrtrix3

MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

mrtrix3_connectome icon mrtrix3_connectome

Generate subject connectomes from raw image data and perform inter-subject connection density normalisation, using tools provided in the MRtrix3 software package.

neurodocker icon neurodocker

Generate custom Docker images and minimize existing containers

obi icon obi

Online Brain Intensive

scanlab icon scanlab

Software for use at the University of Arizona SCAN Lab

singularity-ants icon singularity-ants

Singularity recipes for singularity images containing ANTs (Advanced Normalization Tools).

xcpengine icon xcpengine

Official public repository for the XCP Engine

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