Comments (1)
I had used the same code for drawing the circos links, but subset by unique and shared interactions. I would now recommend running celltalk on two sets of samples and comparing the strengths of the inferred interactions, then drawing two circos plots to highlight significant differences.
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Related Issues (18)
- cols required HOT 1
- Run celltalker with no replicate data HOT 2
- celltalk function notfound HOT 1
- question for output the interactions HOT 2
- celltalk function not found HOT 3
- Error: object 'reshape_matrices' not found HOT 5
- compare_group_interactions
- Error in 'compare_group_interactions'
- Error in receptor_mean_dataframe[rec.use, ] : subscript out of bounds HOT 1
- Error when installing the package
- Using SCT as the assay
- Help figuring out what part of my object is throwing the subscript out of bounds error
- An error when reshaping the matrix HOT 4
- Rotate Label in circos_plot HOT 3
- Error in x[z, ] : subscript out of bounds HOT 9
- How to cite this great software in paper? HOT 2
- Celltalker for different Ligand-Receptor interaction DB HOT 1
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