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Artem Sokolov's Projects

ashlar icon ashlar

ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

covidcurve icon covidcurve

Fitting the curve that we are trying to flatten

cylinter icon cylinter

An Interactive Image Segmentation Filter for Multiplex Microscopy

demix icon demix

Sample deconvolution methods

devenv icon devenv

Personal developer environments

driad icon driad

Drug Repurposing in Alzheimer's Disease

driadrc icon driadrc

Resources for Drug Repurposing In Alzheimer's Disease (DRIAD) work

hugomap icon hugomap

Downloads and wrangles an Ensembl -> HUGO mapping.

mcmicro icon mcmicro

Multiple-choice microscopy pipeline

mcmicro-flowsom icon mcmicro-flowsom

An MCMICRO module for clustering cell types using the flowSOM algorithm

mcmicro-images icon mcmicro-images

MINERVA data overviews for https://www.synapse.org/MCMICRO_images

mcmicro-scanpy icon mcmicro-scanpy

An MCMICRO module implementation of scanpy for clustering cells

merlin icon merlin

MERlin is an extensible analysis pipeline applied to decoding MERFISH data

miccheck icon miccheck

Container definition for testing mcmicro

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