artic-network Goto Github PK
Name: ARTICnetwork
Type: Organization
Bio: This is the ARTICnetwork project, a Wellcome Trust funded project to provide a system for real-time genomic epidemiology of virus outbreaks.
Blog: http://artic.network
Name: ARTICnetwork
Type: Organization
Bio: This is the ARTICnetwork project, a Wellcome Trust funded project to provide a system for real-time genomic epidemiology of virus outbreaks.
Blog: http://artic.network
A base template for an implementation of an ARTIC install. This can be forked and modified for specific use-cases.
Repository of documents and data for Ebola virus
Repository for realtime sequencing of measles virus using the MinION
ARTIC Epi2me compatible workflow and reporting
ARTIC nanopore protocol for nCoV2019 novel coronavirus
ARTIC real-time package for Nipah virus (NiV)
Repository of material for the ARTIC workshop on real-time sequencing for outbreak response.
Cluster Investigation & Virus Epidemiology Tool
A repository of information and resources about viruses in the genus Ebolavirus
The ARTIC field bioinformatics pipeline
Descriptions of the ARTIC field laboratory
Scripts for building the ARTIC lab-on-an-SSD
Signal-level algorithms for MinION data
adapter trimmer for Oxford Nanopore reads
Primer schemes for real-time genome epidemiology
Read Assignment, Mapping, and Phylogenetic Analysis in Real Time
A RAMPART protocol and environment for sequencing Ebola viruses
Nanopore read de-multiplexer
single sample processing
Interactive workflow to run squirrel
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