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Name: Arthur Rand
Type: User
Company: @nanoporetech
Location: Santa Cruz, CA
Name: Arthur Rand
Type: User
Company: @nanoporetech
Location: Santa Cruz, CA
C + python code for pairwise multiple sequence alignment, pulling out this functionality from the Cactus alignment program adapted to align signal-level information from ONT MinION
Modified fork of CURRENNT https://sourceforge.net/projects/currennt/
Scripts and ipython notebooks for reproducing results from "Cytosine Methylation Variation Calling with MinION Nanopore Sequencing"
settings and envs
The Open Source Data Science Masters
efficient alignment of strings to partially ordered string graphs
signalAlign hierarchical Dirichlet process models
A repository for various models and scripts used in the Helicase Reread Project.
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
Python based pipeline management software for clusters that makes running recursive and dynamically scheduled computations straightforward. So far works with gridEngine, lsf, parasol and on multi-core machines.
Classic wordcount, updated with async/await!
A Rust machine learning framework.
UCSC Nanopore
Mesos Integration Tests on Docker/Ec2
Data and analysis for NA12878 genome on nanopore
First generation RNN basecaller
Bioinformatics I/O libraries in Rust
Recipes for using Python's pandas library
# Under Construction
PO-MSA in #golang
Tools used to analyze data from nanopore-based experiments.
Recurrent neural network for nanopores
Smith-Waterman in Rust
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
Tiny lightweight python library for bioinformatics
HMM-HDP models for MinION signal alignments
Notes and scripts for signalAlign
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.