aryazand/ball2022_proseq_timeseries
alignment of proseq results published in Ball et al, 2022 (doi: 10.3390/v14040779)
Repositories
aryazand/rozman2022_tb40_rnaseq
snakemake workflow to process and analyze rna-seq from Rozman et al, 2022 (doi: 10.1016/j.celrep.2022.110653)
aryazand/tb40-slamseq-timeseries
aryazand/fastq-process-align
snakemake based pipeline for processing and mapping fastq files
aryazand/call_tss
a snakemake workflow that uses BAM/CRAM files from nascent RNA sequences to call Transcription Start Sites
aryazand/genome_browser_workflow
aryazand/TxDb.CMV.tb40bac4gfp
TxDb for CMV tb40-bac4-gfp
aryazand/BSgenome.CMV.tb40bac4gfp
BSgenome package for CMV TB40-BAC4-GFP genome
aryazand/alignment_to_expression
A snakemake workflow to take cram/bam files and calculate gene expression values
aryazand/proseq_workflow
A workflow for processing and analyzing proseq data
aryazand/tsrdetectR_old
aryazand/simplified_r_statistic
aryazand/simple_rt
aryazand/rnaseq_to_genome_annotation
Use RNA-seq data to annotate genome
aryazand/create_ucsc_tracks
A fork of epigen/genome_tracks to automatically make ucsc tracks from a folder of track files, sample metadata, and a config file
aryazand/tsrDetectR
Detect transcription start regions from PRO-seq data
aryazand/hff_timeseries_with_bac
aryazand/align_proseq
A custom pipeline to analyze proseq data
aryazand/hepc_integrated_care
Scripts used to clean and analyze data for a project assessing effects of treating hepatitis C in an addiction medicine clinic
aryazand/hff_tb40e_timeseries
aryazand/bam_to_ucschub
custom snakemake pipeline to take bam files and create ucsc hub
aryazand/tssr_pipeline
a pipeline to analysis nascent RNA sequening using the TSSr package
aryazand/quarto-revealjs-clean
A minimalist and elegant presentation theme for Quarto Reveal.js