asafpr Goto Github PK
Name: Asaf Peer
Type: User
Company: HUJI
Location: Jerusalem, Israel
Name: Asaf Peer
Type: User
Company: HUJI
Location: Jerusalem, Israel
Conda recipes for the bioconda channel.
The Biological Observation Matrix (BIOM) Format Project
Official git repository for Biopython (converted from CVS)
Use domain classifier to build kraken2 DB
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Config files used to define parameters specific to compute environments at different Institutions
Program to find core gene consensus synteny, hotspots between these, and construct spatially aware multiple sequence alignments of core genes
Count number of paired-end RNAseq fragments mapped to each gene in bacterial genomes
Code stubs for data analysis regarding COVID19
Classify sequence to a taxonomic domain using PFAM domains
Rapid comparison and dereplication of genomes
A Data Fusion Method for Multi Source (VCF4.0+) Structural Variation Analysis
Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x).
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
pretty print of multiple sequence alignment to RTF files
Jackson Labs hands-on workshop material for using Jupyter Notebooks on CloudOS
A python package and scripts to process PRO-CLASH experiments
QTL analysis software for high-dimensional data and complex cross designs
RILseq computational protocol
Accessory scripts for RILseq including generating microarray plots and MEME
measuring properties of RNA like conservation(actually DNA) and accessibility
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Some short scripts to manipulate RNAseq libraries
Singularity description files
A deep learning-based tool to identify splice variants
Look for short sequences in bacterial genomes
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.