Ali Sinan Saglam's Projects
Analysis tool workshop tutorial files
A set of tools for atomizer analysis
Rule-based modeling framework
A tool to convert a BNGL file (BioNetGen) to a WESTPA simulation
BioNetGen library
A simple python front-end for BioNetGen simulations.
Create, Simulate, Visualize, and Analyze Realistic 3D Cell Models
Chess Engine/AI
A set of sensitivity analysis scripts for a COVID19 tissue simulator
Rapid prototyping coalition for SARS-CoV-2 tissue infection dynamics. (integrated model)
Dominions 5 map scripting extension
Simple script to parse and store GitHub cloning statistics
Some test cases for learning SWIG to use C functions in Python
Tutorial files for livecoms
MCell Monte Carlo Simulator of Cellular Microphysiology
A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
Basic visualization helper library for nfsim trajectories
A very simple implementation of Conways Game of Life that runs in a terminal
A simple CLI for BioNetGen
Python framework for Systems Biology modeling
Repo for 2022 python class
Rule-Based Modeling and Simulation Gui
Some code for the game Screeps
Simulation analysis runner
Example scripts for WESTPA submitted by users
A set of tools to simplify the weighted ensemble sampling of BioNetGen rule-based simulations.