atemia Goto Github PK

2018-10-08-ttt_bixcop

ag2pi_gwas_workshop_june2021

awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

beca

Notes_and_Projects

bioinfokit

Bioinformatics data analysis and visualization toolkit

biological_databases_api

An introduction to Biological Databases and how the API can be used to access data

django-tictactoe

My solution for writing a Tic-Tac-Toe game in Django. Useful for people first getting to know Django.

factoextra

Extract and Visualize the Results of Multivariate Data Analyses

figtree-recolor

A script to re-color a FigTree saved Nexus file

fmb_genetic_diversity

The repository contains codes that I used for STRUCTURE analyses, Phylogenetic inference and PCA during MSc project for genetic diversity assessment of eastern Africa finger millet blast fungus.

geneexpressionplots

A Javascript based tool to visualize gene expression over a custom discrete variable (e.g. time) and grouped by another (e.g. tissue or genotype).

in-depth-ngs-data-analysis-course

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

intro-to-r

intro-to-r-1

Scripts and data to go along with introductions to R

intro2machinelearning

introductorylinux-2019

lab-book

An extension of the original lab book under usadel lab repositories.

lowcostopenaccess

This is a resource where people can get information on journals where they can publish at waived or subsidised APC.

module4_rnaseq

The fourth module of the 2018 Bioinformatics Community of Practice at BecA-ILRI Hub

module5_quantitative_genetics

Module 5 of the 2018 Bioinformatics CoP at Beca, on quantitative genetics, genotyping-by-sequencing, genome-wide association studies and genomic selection

module6_phylogenetics_metagenomics

ncbicomputationalcookbook

Jupyter notebooks to more effectively leverage computational resources at NCBI.

ngphylogeny-django

openscienceinbioinformatics-kenya

Promoting Open Science in Bioinformatics - Kenya

phylogenetics

This is the repository for the module on phylogenetics (Thursday 11 July 2019)

popgeninfo

Vignettes for Population Genetics in R

pydata-book

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

pyjip

JIP Pipeline System

python4bioinformatics2019

Updated materials for MSc Bioinformatics for Pwani University

pythondatasciencehandbook

https://github.com/jakevdp/PythonDataScienceHandbook.git