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alignqc

Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser compatible xhtml to visualize/share/store/extract analysis results.

atea

genoclone

idp-denovo

IDP-denovo: a tool for de novo transcriptome assembly and isoform annotation by hybrid sequencing.

idp-fusion

IDP-fusion: an gene Isoform Detection and Prediction tool from Second Generation Sequencing and PacBio sequencing

idpase.jl

IDP-ASE: haplotyping and quantifying allele-specific expression at the gene and gene isoform level by hybrid sequencing

lrgasp-challenge-2-evaluation

lsc

LSC: a long read error correction tool. It offers fast correction with high sensitivity.

manual-for-running-idp-pipeline

IDP pipeline for identifying novel genes and isoforms

meripbox

Analyze RNA modifications by sequencing data: data processing, alignment, peak calling, transcript quantification and motif search

np-smlr

NP-SMLR: Single-molecule long-read sequencing reveals the chromatin basis of gene expression

redd

ReDD: RNA editing detection by direct RNA sequencing and deep learning

splicemap

A fork of Standford's SpliceMap -- Copyright (c) 2010 Kin Fai Au and John Chong Mu.