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abstracts

A list of abstracts related to bioboxes

acpi_call

A linux kernel module that enables calls to parameterless ACPI methods through /proc/acpi/call

alphafold_non_docker

AlphaFold2 non-docker setup

ancestry

program to estimate admixture coefficients from individual genotype or sequence data

ancestry_tools

ancestry tools

apq-qsne

A collection of code for Dimensionality Reduction for Documents with Nearest Neighbor Queries

awesome-molecular-generation

Awesome papers related to generative molecular modeling and design.

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bamutil

basespace-playground

code playground using Illumina BaseSpace

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

benchling-api

A python wrapper for the benchling api

bfr

nonblocking 8-bit-clean pipe buffer, 原代码所在网址: http://archive.ubuntu.com/ubuntu/pool/universe/b/bfr/bfr_1.6.orig.tar.gz

bhtsne

Barnes-Hut t-SNE

bin

little utilities for the ~/bin directory

bioboxes.org

The website for bioboxes

bioboxes_playground

biosyntax

Syntax highlighting for computational biology

bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bs-snper

bumblebee

Optimus Support for Linux Through VirtualGL

bumblebee-1

Bumblebee daemon and client rewritten in C

bwa-meth

align BS-Seq reads and extract methylation without intermediate temp files

calculate_clip_overlap

calculate rate of overlapping bases in paired-end reads from a bam file

clusterflow

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

colabdesign

Making Protein Design accessible to all via Google Colab!

common-workflow-language

Repository for CWL Specifications

cutadapt

cutadapt removes adapter sequences from sequencing reads

dandelion

dandelion - A single cell BCR-seq analysis package for 10X Chromium 5' data

deeptools

Tools to process and analyze deep sequencing data.