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Name: Avimanyu Bandyopadhyay

Type: User

Company: GizmoQuest Computing Lab

Bio: Doctoral Researcher on GPU-based Bioinformatics at Heritage Institute of Technology. Core dev @cellmodeller. Systems Scientist at @nunet-io.

Twitter: iAvimanyu

Location: Kolkata, West Bengal, India

Blog: https://linktr.ee/avimanyu

👋 Hello and welcome, I'm Avimanyu Bandyopadhyay. You can call me Avi.

Who Am I? 🎓

I'm a Bioinformatics PhD candidate from Kolkata, India. My journey began with a modest Master's project on autism and dolphin therapy back in 2014. I have been grateful for every learning opportunity since then.

Why Bioinformatics? 🧬

My work started with a simple curiosity about dolphin therapy for autism, leading me to broader studies in multicellularity via CellModeller. I'm continually amazed by the wonders of biology and computation.

The Systems Scientist 🛠️

I currently have the privilege of working as a systems scientist at NuNet, which allows me to build a platform that would have the potential bring computational solutions to biological questions. My past experience as a system administrator for two years has been instrumental in shaping my path.

Funding My Dreams 💡

Self-funding my research has been challenging but rewarding. I've tried to give back by contributing articles to platforms like "It's FOSS" and "Linux Handbook" in my spare time. Repurposing my research hardware has also been very helpful in this regard.

The Writer, Gamer & Musician 📝🎮🎶

It's been an honor to write for the Linux community and to be recognized as a Ubisoft Star Player. Music also holds a special place in my heart, and I'm fortunate to be able to play the piano and drums.

The Tech-Savvy Researcher 💻

I've built my computing lab piece by piece, documenting my journey in a book on GPU Computing. I'm always eager to share what I've learned.

Open Source & Decentralization Advocate 🌐

I try my best to contribute to the open source community and have been exploring the potentials of decentralization through platforms like NuNet.

AI Prompting & Search Engine Specialist 🤖

I'm fortunate to have gained experience in search engine prompting skills, allowing me to craft more effective queries in this era of generative AI. My existing GitHub repository, while not related to my AI work, is something I view as a learning journey.

Ongoing Projects 🚀

As I continue my research, I've been able to revisit my initial interests in autism and dolphin therapy, this time with a little more wisdom and a focus on cellular and protein dynamics.

The Journey Continues 🛣️

Though the pandemic has extended my academic journey, every day offers a new lesson and I'm thankful for the extra time to grow and contribute.

Thank you for taking the time to visit and learn about my work. Your interest is truly appreciated.

Avimanyu Bandyopadhyay's Projects

42-workshop

Workshop material for 42 PyCharm Tips and Tricks

analytics

Simple and privacy-friendly alternative to Google Analytics

apcupsd-deb-to-tcz

Experimental tcz packages(for Tiny Core Linux) of apcupsd packages ported from Ubuntu Focal. Haven't been tested yet.

avimanyu786

About me

avimanyu786.github.io

Home Page

casper

The default theme for Ghost

cellmodeller

GPU-accelerated multicellular modelling framework

cellmodeller-docker

NVIDIA and AMD docker container images based on https://github.com/HaseloffLab/CellModeller

cellmodellerwithclpy

Enhancing GPU usage and Cell Growth on CellModeller with ClPy

cellmodellerwithcupy

Enhancing GPU usage and Cell Growth on CellModeller with CuPy

chatgpt-at-home

ChatGPT @ Home: Large Language Model (LLM) chatbot application, written by ChatGPT

concrete-ml

Concrete-ML is a Privacy-Preserving Machine Learning (PPML) open-source set of tools which aims to simplify the use of fully homomorphic encryption (FHE) for data scientists. Particular care was given to the simplicity of our Python package in order to make it usable by any data scientist, even those without prior cryptography knowledge.

cupy

NumPy-like API accelerated with CUDA

deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

deepchemonrocm

To enable DeepChem for AMD GPUs

devika

Devika is an Agentic AI Software Engineer that can understand high-level human instructions, break them down into steps, research relevant information, and write code to achieve the given objective. Devika aims to be a competitive open-source alternative to Devin by Cognition AI.