aweyre7147 Goto Github PK
Name: Alex Eyre
Type: User
Bio: Researcher with interest in high-throughput computing to study, and agent-based modeling to develop intuitive understanding of natural systems.
Location: Columbus, OH
Alex Eyre's Projects
2013tsa-trait-ml-project
This repository contains all of the data and Python code for the publication, "Machine Learning Prediction and Classification of Behavioral Selection in a Canine Olfactory Detection Program". Simply save all the files to a folder and run the Jupyter Notebook.
2013tsa_gwas-cbarq_phewas_iut
A dump of data and a python script used to create a streamlit web app to visualize the results of a PheWAS + IUT on CBARQ questions for the markers identified in a 2013TSA dataset for 'behavioral elimination'. Link to the web app will be in the Readme.
gwas-phewas-structure-exploration
A pipeline that inputs PLINK .raw formatted genotype data and output a series of graphs based on analyses used to explore population structure.
natural-processes-modeling
A series of agent-based models developed to explore various natural processes, mainly focused around natural resources.
paml-pipeline
Python Scripts: Multiple transcript FASTA cleaning/sorting scripts, alignment with MUSCLE, usage in the CodeML algorithm of PAML, and statistical analysis
rice-microbiome
R Scripts used in an analysis of the rice seed microbiome.
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