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asvdataprocessing

axela

Chaste user project

axelalmet.github.io

commotsyntheticbenchmarking

fibroblastanalysis_2023

Python and R code used to produce the analysis in Almet et al. (2023), "Fibroblasts evolve in single-cell state to drive extracellular matrix and signaling changes across wound healing."

flowsig

Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.

flowsiganalysis_2023

Python and R code used to produce the analysis in Almet et al. (2023), "Inferring pattern-driving intercellular flows from single-cell and spatial transcriptomics"

jouluolled2023

Three.js project to show different beers for Family Christmas 2023.

morphoelasticcrypt

Code for model development of a growing crypt, based on the morphoelastic rod framework of Moulton et al. (2013)

simple-scvi

Example repo of using scvi-tools building blocks externally with simplified scVI implementation