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10x-scatac-2019

Code Repository for Satpathy Granja et al 2019

2018_nxf2_paper_scripts

academic-kickstart

📝 Easily create a beautiful website using Academic, Hugo, and Netlify

art-r-translation

《R语言编程艺术》翻译项目文件

awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bakerwm.github.com

R and Perl

bed2_summary

get smallRNAseq summary in piclusters, transposons and genes from bed2 files generated by piPipes or other softwares

biogpt_local

test BioGPT

biomartpy

Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)

biotools

A list of useful bioinformatics resources

blog_pic

save pictures for blog

centipede

A copy of CENTIPEDE source code from R forge, https://r-forge.r-project.org/projects/centipede/

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

chip-seq-pipeline2

ENCODE ChIP-seq pipeline

clam

CLIP-seq Analysis of Multi-mapped reads

clip_analysis

Scripts to analyze (PAR-)CLIP data.

clipper

A tool to identify CLIP-seq peaks

complete-python-3-bootcamp

Course Files for Complete Python 3 Bootcamp Course on Udemy

data_science

collection of tools for data science

demo

What the Package Does (One Line, Title Case)

demor

demo R package

distribution-is-all-you-need

The basic distribution probability Tutorial for Deep Learning Researchers

dnbelab_c_series_ht_scrna-analysis-software

An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets

fastqcount

fastq 数据 reads、bases、N-bases、Q20、Q30、GC 统计

fastqcr

fastqcr: Quality Control of Sequencing Data

find_hbonds

Find Hydrogen Bonds using PyMOL

find_te_ins

Find Transposon Element insertions using long reads (nanopore), by alignment directly. (minimap2)

fly-atac

Code relevant to sci-ATAC-seq of Drosophila embryogenesis.

funniest

demo Python package