baoqingding Goto Github PK
Name: baoqingding
Type: User
Name: baoqingding
Type: User
Allele-specific analysis of RNA-seq and DNA-seq data
Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)
ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
early version of (Pipeline for detection of differential allelic imbalance from RNA-seq)
Preprocessing sequencing data for allele-specific analysis
Developed by Qiaoshan Lin in Yaowu Yuan Lab
Fast genome-wide functional annotation through orthology assignment
Replicating the bioinformatics and statistics pipelines for allele-specific expression analysis of ovary tissue from F1 honey bees of AHBxEHB reciprocal crosses as described in Galbraith et al. (2016). PNAS. https://www.pnas.org/content/113/4/1020
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
mutant identification in Mimulus lewisii complex
MutMap pipeline to identify causative mutations responsible for a phenotype
Repository of the Current Biology publication: Pseudogenization and resurrection of a speciation gene
This repository contains the codes for the R tutorials on statology.org
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Toolkit for processing sequences in FASTA/Q formats
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Instructor training preparation, September 2015
Scripts used in analysis of "Predominance of cis-regulatory changes in parallel expression divergence of sticklebacks".
A step-by-step tutorial for Weighted correlation network analysis (WGCNA)
A fuzzy Bruijn graph approach to long noisy reads assembly
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.