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ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
Genome annotation with AUGUSTUS
C++ API & command-line toolkit for working with BAM data
API libraries, application examples, and custom tools for BaseSpace Clarity LIMS
A powerful toolset for genome arithmetic.
Bioinformatics QC Reporting Tools
BWK awk modified for biological data
A fork of Paul Hsieh's Better String Library
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Open or Easy Access Clinical Data Sources for Biomedical Research
Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.
The Python programming language
DCell browser and gene deletion simulator
Tools to process and analyze deep sequencing data.
Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
The fast.ai deep learning library, lessons, and tutorials
De novo assembly based variant calling pipeline for Illumina short reads
Tools for working with genomic and high throughput sequencing data.
a lightweight db framework for exploring genetic variation.
Remap the Genome in a Bottle NA12878 validation variant calls to human genome build 38
The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data
Data simulation software that creates data sets with particular characteristics
C library for high-throughput sequencing data formats
C++ Library to parse Illumina InterOp files
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
Structural variant and indel caller for mapped sequencing data
VCF file filtering pipeline
Web application to collect and visualise data across multiple MultiQC runs.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.