Name: Benjamin Barad
Type: User
Company: Oregon Health & Science University
Bio: Asssitant Professor at Oregon Health & Science University. Structural biologist with a special interest in methods for cryo-electron tomography
Twitter: benjaminbarad
Location: Portland, OR
Blog: http://benjaminbarad.com
Benjamin Barad's Projects
Pymol Language for Atom Text Editor
Readme
Personal Webpage
A project for doing analytics scraped from biorxiv - learning web scraping.
The in-class programming project for QBC Bootcamp
A Docker container for cisTEM development
I love roasting, brewing, and drinking coffee.
Team Defects project for DL@MBL project
Joint training of denoising and segmentation.
Pytorch implementation of DiffusionNet for fast and robust learning on 3D surfaces like meshes or point clouds.
A quick project to teach python to aspiring scientists in an hour or two.
My docker files
Operations on Quantized or Binary CryoET Segmentations
Using neural networks to reduce the tradeoffs in tomographic data collections
This repository hosts the code for HDN (associated with the paper https://arxiv.org/pdf/2104.01374.pdf) for pixel and structured noise removal for microscopy and natural image datasets
Map tomograms back to their lamella position
A repository to version the work that I do while I learn Julia.
Live On The Fly 2D Classification with cisTEM and Warp
A series of instructions and scripts to set up a brand new mac to have all my desired settings.
Settings file for matplotlib to maximize figure niceness.
membrane segmentation in 3D for cryo-ET
Thompson Lab Website
Spelling Bee twitter bot for words used often by scientists.
Default channel file for Package Control. Follow the directions at:
Download your tagged photos from Facebook