becksteinlab Goto Github PK
Name: Becksteinlab
Type: Organization
Bio: Computational Biophysics at Arizona State University
Location: Tempe, AZ
Name: Becksteinlab
Type: Organization
Bio: Computational Biophysics at Arizona State University
Location: Tempe, AZ
Becksteinlab profile
Basic tutorial for running and analyzing a Gromacs MD simulation of AdK
A repository of radical.ensemblemd kernels used by the Beckstein Lab
A small Python package to set up electrostatic solvation free energy ("Born energy") calculations of an ion in a membrane protein and calculate the electrostatic free energy with APBS .
Materials for PHY 494
Conda package of gromacs 2016 intended for testing purposes.
Conda package of gromacs 4.6.7 intended for testing purposes.
Conda package of gromacs 5.1.2 intended for testing purposes.
Jack Henderson's CpHMD analysis scripts
A command line utility intended to assist in recovering data from corrupted gromacs trajectories.
GromacsWrapper wraps system calls to GROMACS tools into thin Python classes (GROMACS 4.6.5 - 2024 supported).
Legacy code from GromacsWrapper: gromacs.analysis module
Fork of Bosco Ho's and Franz Gruswitz's HOLLOW 1.1 (see http://hollow.sourceforge.net/).
Solvent network analysis. Hop is a python package based on MDAnalysis to analyze solvation dynamics.
prototype IMDReader for MDAnalysis
Python package used for the analysis of biochemical kinetic diagrams.
Kinetic Diagram Analysis Examples
Lipidbook force field repository (public issue tracker and wiki).
a quick primer on making prettier (and more impactful) plots
A package that interfaces SQLite database IO with MDAnalysis analysis results.
Benchmarking MDAnalysis with dask.
MDAnalysis Tutorial at the 2015 CECAM Macromolecular simulation software workshop
Calculation of water/solvent partition coefficients with Gromacs.
torsional sampler
molecular dynamics, with Fireworks!
A minimal working example for an article written in LaTeX
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.