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bioinfo-tools

Collection of Python and other data analysis resources

blogs

Links to data science, bioinformatics, statistics, and machine learning resources

cbioportal

cBioPortal for Cancer Genomics

ddot

Toolkit for constructing, analyzing, and visualizing data-driven ontologies

differentgenedoublemutations

elegant-scipy

1st Edition of Elegant SciPy (O'Reilly Publishers)

evcouplings

Evolutionary couplings from protein and RNA sequence alignments

knowledgedisvoveryandmining

Instruction materials to use R for Knowledge Discovery and Mining. This repo is part of IS580 - Knowledge Discovery and Mining course in METU Informatics Institute. For further information please contact [email protected]

latentdriverdiscovery

maftools

Summarize, Analyze and Visualize MAF files from TCGA or in house studies.

mina

Integrative network analysis for gene-gene interactions associated with clinical outcome across multiple genomic profiles

notebooks

The compiled, clean (not run) Jupyter notebooks for Elegant SciPy

npeet

Non-parametric Entropy Estimation Toolbox

pcst_fast

A fast implementation of the Goemans-Williamson scheme for the prize-collecting Steiner tree / forest problem.

stepwise

Stepwise methods for selection of "best" fitting linear models

tcga-survival-analysis

tcga2stat

tcgabrowser

Shiny tool for TCGA

tcgaintegrator

Python utilities for building integrated views of TCGA data.

tcgasurvival

Scripts to analyze TCGA data

varcode

Library for manipulating genomic variants and predicting their effects

zhusuan

A Library for Bayesian Deep Learning, Generative Models, Based on Tensorflow