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.vim

Personal VIM config

asvz-registration

augmend

simple package for augmentation of n-dimensional arrays

backbones

Common neural network architectures implemented in PyTorch

bash-it

A community Bash framework.

benjamingallusser

My personal website

biogtr

bioimageutils

Reoccuring utility functions and scripts for ML on bioimages

chartify

Python library that makes it easy for data scientists to create charts.

daisy

Block-wise task scheduling for large nD volumes.

funlib.learn.torch

funlib.segment

Tools to segment graphs and volumes

funlib.show.neuroglancer

Scripts and helpers for the neuroglancer WebGL viewer.

gnn_agglomeration

Supervoxel Agglomeration using Graph Neural Networks with PyTorch geometric

gnn_toy_example

Getting familiar with Graph Neural Nets and the pytorch_geometric library

gunpowder

A library to facilitate machine learning on multi-dimensional images.

ilpy

Unified python wrappers for popular ILP solvers

imjoy-starter

kunst_automatisch_aufraeumen

laptrack

Particle tracking by solving linear assignment problem.

linajea

logincode

lsd

🌈

motile

Multi-Object Tracker using Integer Linear Equations

napari-open-ctc

nerdcommenter

Vim plugin for intensely nerdy commenting powers

omniboard

Web-based dashboard for Sacred

project_summaries

Reports for selected projects I have worked on in the past

sacred

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

stardist

StarDist - Object Detection with Star-convex Shapes