berenslab Goto Github PK

abc-ribbon

bayesian_2p_pipeline

Code for the manuscript "Bayesian hypothesis testing and experimental design for two-photon imaging data"

bc_network

cbc_inference

Code etc. for CBC inference paper of Oesterle el al. 2020

coding-guidelines

Collaboration guidelines and default configurations for common Github repositories.

cone_colour_tuning

contrastive-ne

Contrastive neighbor embeddings

delfi

Density estimation likelihood-free inference

djcaiman

DataJoint CaImAn image

eff-ph

Persistent homology for high-dimensional data based on spectral methods

elfi

ELFI - Engine for Likelihood-Free Inference

ephysextraction

Code to extract electrophysiological parameters of neurons.

ephyspy

A Python package for electrophysiological feature extraction for patch-clamp experiments.

finer-tsne

Code for the paper on t-SNE with variable degree of freedom

fslm

refactored fslm repository

fslm_repo

reproduce results of fslm paper

fundus_circle_cropping

Code for extracting a circular mask from fundus images and tightly cropping the images around the mask.

genderbagnets

Interpretable gender classification from retinal fundus images using BagNets

hc-connectivity

Code related to Behrens et al. 2021

hh_sbi

hipp_silentactive

Analysis of silent and active cells in hippocampus in collaboration with Burgalossi lab

iclr-dataset

interpretable-sparse-activation

layer4

Analysis code for the L4 paper

ma_la_for_mml

Code for my Masters Thesis "Robust Uncertainty Estimation in Medical Machine Learning Applications with the Laplace Approximation". Mostly based on Laplace Redux -- Effortless Bayesian Deep Learning

medical-t-simcne

This repository contains the codes to train a t-SimCNE model. This model has been shown to produce good representations on natural and medical images.

midl24-segmentation_quality_control

Experiments for MIDL 2024 Submission: Controlling Segmentation Quality per Image

mini-atlas

Phenotypic variation of transcriptomic cell types in mouse motor cortex

morphology-benchmark

morphopy