Comments (4)
Some more information:
- The MPI implementation used on the cluster is MVAPICH2
- Here is a minimal bit of code that produces the error.
- Interestingly, using the MPI pool implementation from this thread does not produce this error. See this code for an example.
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I just tested on a different cluster that uses openMPI v1.6.5 and I see the same behavior.
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@adrn , I don't remember what exactly I did, but you can see that I used this MPI pool class instead: https://github.com/juliohm/HUM/blob/master/pyhum/utils.py#L24
Good luck.
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I haven't been able to look into this too deeply yet, but I've managed to reproduce UnpicklingError
s locally.
If I run without load balancing it seems to go away, and it looks like the MPI pool class pointed to by @juliohm doesn't do any load balancing either.
@adrn, do you get UnpicklingError
with load balancing off? If emcee
works fine for you with the same configuration, it would be surprising if it were a problem with the load balancing...
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