bgi-qingdao Goto Github PK

10x2stlfr

convert 10X raw reads into stLFR reads format . ( still within developing)

4d-bioreconx

a bioinformatic framework for reconstructing 4D spatial transcriptomics atlas and spatiotemporal analyses+

antarctic_krill_project

The pipelines and scripts used in Antarctic krill project

burnett

evolution

circle-map

A method for circular DNA detection based on probabilistic mapping of ultrashort reads

circle-map-cpp

rewirte part of Realign module in Circle-Map by c++

contiggapoverlapcheck

ema_sf

extractngsreads

extract subset of NGS PE reads

fabulous2.0

fish10k

Scripts for fish10k project

gem3d_toolkit

A tool to use stereo-seq GEM and ssDNA to generate single-cell and 3D spatial resolved transtriptomics data

gomc

hast

HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy

hast-sv-filter

hast410xg

hast4tgs

A version of HAST for TGS long reads, fast and memory-effiective trio-binning.

hictriobinning

lungfish_scrna_data_analysis

Analysis code for lungfish single cell RNA-seq data

metaslr

metatrass

Metagenomics Taxonomic Reads Assembly Single-Species

module_completeness

Checks if the given module is complete

moso_bamboo_resequencing

The pipelines and scripts used in moso bamboo population sequencing

planarian4d

processgroupmonitor

A simple tool to monitor a process group and record its CPU, MEM and time cost.

scaffmisassemblyanalysis

scmultimodal

Multimodal integration of various types of sequencing data

slr-superscaffolder

A scaffold assembling pipeline for stLFR reads.

soapdenovolr

spagrn

A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.