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3d-structure-coloring

Methods and data files to color RNA 3D structures

alignment-server-dev

Development of "alignment server" in conjunction with the Gutell Lab at UT-Austin.

base-stacking-catalog

RNA Base-stacking Catalog

conformationalchange

Matlab programs to detect local and large-scale conformational changes in RNA 3D structures

fr3d

The official repository for "Find RNA 3D" (FR3D), a suite of programs for searching RNA 3D structures.

fr3d-python

Python implementation of the FR3D software for searching and annotating RNA 3D structures

fr3d_history

This repository contains all archived versions of FR3D committed to one repository. Has only historical interest. Not maintained.

heatmap

Basepair Catalog implemented on NDB

jar3d

Java-based Alignment of RNA using 3D structure

jar3d-website

JAR3D webserver for matching RNA loop sequences with RNA 3D motifs

loop-extraction-benchmark

r3dalign

The official repository for R3DAlign, a program for aligning RNA 3D structures.

ribosome-functional-annotation

Python code for inferring ribosomal chain, tRNA occupancy, and bound protein factors/ligands

rna-3d-correspondence

rna-3d-hub

Resources for RNA Structural Bioinformatics: RNA 3D Motif Atlas, RNA Non-redundant Lists, RNA Structure Atlas

rna-3d-hub-core

New resources for RNA Structural Bioinformatics: RNA 3D Motif Atlas, RNA Non-redundant Lists, RNA Structure Atlas (motif extraction and classification, database management)

rna-base-triples

Matlab code to model, find, and count RNA base triples

rna-protein-stacking

A place to put code for displaying RNA protein interaction data

rna-structure-utils

Some utilities for dealing with RNA structure

rnao

Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures

unitidtranslation

Translate unit Ids from old to new formats

webfr3d

Web application for searching RNA 3D structures.

webr3dalign

Web application for locally optimized, nucleotide to nucleotide pairwise alignments of RNA 3D structures