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BIGtiger's Projects

nutvar2 icon nutvar2

Classifier of the potential pathogenicity of human genomic truncations

omics icon omics

A Python package for omics data analysis

paml-runner icon paml-runner

Determines whether positive selection is acting on a gene.

pcoc icon pcoc

Convergent substitution detection tool based on the PCOC model

pdfgpt icon pdfgpt

PDF GPT allows you to chat with the contents of your PDF file by using GPT capabilities. The most effective open source solution to turn your pdf files in a chatbot!

phoscalc icon phoscalc

The Sainsbury Lab Tool for estimating the likelihood of phosphorylation at possible sites in a peptide from Mass Spec data

phyloacc icon phyloacc

PhyloAcc a software to detect the changes of conservation of a genomic region

phylogenomics icon phylogenomics

(Mostly) Perl scripts that do something related to phylogenomic analysis.

plinkline icon plinkline

Finding regions of selection with iHS and XP-EHH, a pipeline between PLINK, scripts from the Pritchard lab and beyond.

polysel icon polysel

Pipeline to detect polygenic selection in gene sets

positive-selection icon positive-selection

Scripts and procedures for detecting positively selected genes and codons in primates

ppgfinder icon ppgfinder

Discover processed pseudogene from long structural variations.

psgfilter icon psgfilter

a pipline for quality control toward positive selection analysis

psmc icon psmc

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

python icon python

All Algorithms implemented in Python

python-biplot icon python-biplot

Generates simple biplot using common scientific Python packages

python-mle icon python-mle

A Python package for performing Maximum Likelihood Estimates

pythonhmm icon pythonhmm

A toy Python implementation of the Hidden Markov Model.

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