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1.models_of_single_neuron

Simple Models of Single Neuron in Rodent Brains

2016601

Thalamocortical sleep model (Krishnan et al., 2016)

amy-hpc-sleep-dynamics-python

beta-oscillation

Code for work about Beta Oscillation

braineigenmodes

Code supporting 'Geometric constraints on human brain function'

brainmodels

Brain models implementation with BrainPy

brainpy

Brain Dynamics Programming in Python

btsp-based-learning

Code repository of the article: Rapid memory encoding in a recurrent network model with behavioral time scale synaptic plasticity

causal-optoconnectics

Causal inference of connectivity between neurons

clusteredglms

complexity-of-cortical-wave-patterns-of-the-mouse-cortex

The codes for Nat. Comm. paper entitled by "Complexity of cortical wave patterns of the wake mouse cortex"

computational-neuroscience-uw

Python scripts that supplement the Coursera Computational Neuroscience course by the University of Washington

corticalsw_inference

course-content

Summer course content for Neuromatch Academy

covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

criticality_hlab

discovering_rhythmicity

discriminating-rems-from-wakefulness-by-analyzing-high-frequencies

edfview

A free, opensource, multiplatform, universal viewer and toolbox intended for, but not limited to, timeseries storage files like EEG, EMG, ECG, BioImpedance, etc.

eeg_modelling

Code for simulating aperiodic EEG signals and detrending EEG spectra, as well as generating figures used in manuscript.

electromagnetic-induction-sa

Stochastic analysis of electrical activities in hippocampal CA3 pyramidal neuron model under electromagnetic induction

epilepticactivity_ieeg

This toolbox was designed for detecting pathological activity (interictal spikes) in iEEG data recorded from epileptic patients.

gamma_oscillations_pcx

Codes to reproduce Figures 1-7

hierarchical-module-analysis

This project provides the codes for the nested-spectral partition (NSP) method based on eigenmodes of human brain functional networks, and the measures of integration and segregation component.

hodgkin-huxley_network

Model 3 HH neurons connected in different motifs and different axonal delays. Compute synchronization between spikes and information flow between them.

homeostatic_structural_plasticity_rtms

This reporsitory hosts simulation files, data and plotting notebooks supporting the preprint 'Repetitive transcranial magnetic stimulation (rTMS) triggers dose-dependent homeostatic rewiring in recurrent neuronal networks' by Anil et.al., 2023.

human_neuron_ih

This repository contains the simulation code to run single neuron simulations in the early version of bmtk (https://github.com/AllenInstitute/bmtk)

ibogaine_analysis_2020

interneuron_ripples_with_ifa

Code for manuscript 10.1101/2023.01.30.526209

intro_hpc_python

Extended material of the summer course "Introduction to High-Performance Computing in Python for Scientists!". Goethe Research Academy for Early Career Researchers (GRADE), Goethe University Frankfurt, Germany.