bilgelm Goto Github PK

abstract_wordcloud

Search PubMed for abstracts with a given author name and make a wordcloud from abstracts' text

bilgelm.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

dynamicpet

Dynamic positron emission tomography (PET) analysis

intensity-normalization

normalize the intensities of various MR image modalities

kineticmodel

Kinetic models for dynamic PET analysis

linreg_interaction_centering

An interactive shinyapp illustrating how to interpret the terms in a linear regression when an interaction is included as an independent variable

meld

Mixed Effects models for Large Datasets

nanslice

A Python implementation of 'dual-coding'

nimare

Coordinate- and Image-based meta-analysis in Python

nimare_tutorial

niwidgets

pet2bids

PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side file like .e.g excel sheets

pet_spatial_resolution_confound

petdeface

A nipype implementation of an anatomical MR and PET defacing pipeline for BIDS datasets

pib_analysis

PiB data analysis for WRAP and BLAS

progscore

sila-ad-biomarker

The sampled iterative local approximation algorithm was developed by Dr. Betthauser at the University of Wisconsin-Madison to model longitudinal amyloid PET data and estimate individual A+ onset age. This algorithm may have applications in other areas where long-term population trajectories can be surmised from shorter individual longitudinal assessments.

simple-image-processing

A simple image processing example: thresholding, masking, morphological operations.

temporalimage

Simple calculations on 4D images with corresponding frame timing information