Comments (4)
This issue is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 7 days.
from biocommons.seqrepo.
This issue was closed because it has been stalled for 7 days with no activity.
from biocommons.seqrepo.
This issue is stale because it has been open 90 days with no activity. Remove stale label or comment or this will be closed in 7 days.
from biocommons.seqrepo.
This issue was closed because it has been stalled for 7 days with no activity.
from biocommons.seqrepo.
Related Issues (20)
- update seqrepo to use the current biocommons.example project template HOT 2
- Update README to include OSX-facing instructions HOT 1
- Specify black version HOT 5
- Database file problem with 2023-09-18 snapshot HOT 6
- Sqlite3 timestamp converter is deprecated as of Python 3.12 HOT 1
- Repeated sequence not being captured entirely, intermittent data issues HOT 1
- Seqrepo not giving back consistent data
- Make fd_cache_size configureable via env variable
- Support custom/federated data HOT 3
- Problem with latest release (aliases) ... HOT 2
- Generalize the seqrepo interface and implement new backends HOT 2
- Command Line usage example commands do not run properly HOT 3
- `seqrepo` cli not installed in 0.6.6 and 0.6.7 HOT 4
- --update-latest CLI flag is not pulling in the most recent version HOT 4
- seqrepo pull often fails when renaming tmpdir
- pre-commit hook causes unexpected problems on existing codebase HOT 1
- ModuleNotFoundError (pkg_resources) on import in 3.12
- `seqrepo pull` expects existing `seqrepo` dir
- IPython dependency -- remove it or make it optional
- Reintroduce or remove DuplicateFilter
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