Way to know what packages are installed in a mulled container about multi-package-containers

[ggrimes]

You can run the docker image

$ docker run --rm -it  quay.io/biocontainers/mulled-v2-ac74a7f02cebcfcc07d8e8d1d750af9c83b4d45a:f480262c6feea34eb5a49c4fdfbb4986490fefbb-0

And in the command prompt type

/ # grep specs /usr/local/conda-meta/history
# update specs: ['pigz=2.3.4', 'samtools=1.9', 'bowtie2=2.4.1']

or download the hash.tsv and run the mulled-hash command

Install the galaxy-tool-util package using conda

$ conda create -n mulled galaxy-tool-util -c conda-forge -c bioconda
$ conda activate mulled

$ wget https://raw.githubusercontent.com/BioContainers/multi-package-containers/master/combinations/hash.tsv
$ cat hash.tsv|while read line; do printf "$line\t";mulled-hash $line; done|grep "mulled-v2-ac74a7f02cebcfcc07d8e8d1d750af9c83b4d45a:f480262c6feea34eb5a49c4fdfbb4986490fefbb-0"

bowtie2=2.4.1,samtools=1.9,pigz=2.3.4	mulled-v2-ac74a7f02cebcfcc07d8e8d1d750af9c83b4d45a:f480262c6feea34eb5a49c4fdfbb4986490fefbb

[ryancey1]

Hi @sidorov-si, have you been able to find a way to do this?

[ryancey1]

Thanks, @ggrimes!

[bgruening]

I add some help on how to search also to the main readme file: mulled-hash changeo=1.2.0,igblast=1.17.1,wget=1.20.1
mulled-v2-7d8e418eb73acc6a80daea8e111c94cf19a4ecfd:e7f88c6f7da46a5407f261ca406c050d5bd12dea