bioinf2305 Goto Github PK

alpine_cc2023

ancseqalign

ascertainmentbiassim

bamtovcf

bioconda-recipes

Conda recipes for the bioconda channel.

calcfwh

cpp script to calculate tajimas D, FWH, theta, pi, segregating sites

cdsanalyses

create-gvcf

fastqtobam

pipeline in progress to process and align the raw fast files against the use-provided reference

fetchngs

Pipeline to fetch metadata and raw FastQ files from public and private databases

fqgrep-in-progress

intro2docker

Basic Docker exercises with CodeSpaces

ml-barcoding

Depository contains script for the plant DNA barcoding using ML

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

mugio

Inverted Repeat Junction identifier for use with ONT (MinION) sequencing.

nf-core-vcffilter

pandas-learning

repository to learn pandas

rtd-tutorial

scalepopgen_doc

scalepopgen_results

scalepopgen_v3

sib_course_nextflow_nov_2021

Nextflow course 2021

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

statsgenomewindow

This repository contains all the scripts I used to extract heterozygosity and depth information in windows across the genome

trivial-python-scripts

python scripts for day-to-day use

variantcalling

This repository contains all the codes to perform the variant calling in parallel using GATK haplotype caller and bcftools mpileup

wgsalignmentscripts