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2018-cs109a

Repository for CS109A Fall 2018

2019_aug_ml_ensemble

Material for the workshop on ML ensemble methods using caret and shiny by Valeria Fonseca Diaz on 6th of August 2019.

adabound-tensorflow

Simple Tensorflow implementation of "Adaptive Gradient Methods with Dynamic Bound of Learning Rate" (ICLR 2019)

adabound-tensorflow-1

An optimizer that trains as fast as Adam and as good as SGD in Tensorflow

bash_functions

Functions I keep in my .bash files. Usually written badly by myself (to handle only very specific cases) or also possibly stolen off the internetz

bgcs_in_rare_metagenomic_dna

bigscape

Biosynthetic Genes Similarity Clustering and Prospecting Engine. Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard Index of domain types, Domain Sequence Similarity the Adjacency Index)

bioinfo-tools

Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.

coinfinder

A tool for the identification of coincident (associating and dissociating) genes in pangenomes.

conkat_seq

containers-workshop

Materials for the workshop on containers

corason

Bioinformatic Tools for study Evolution of metabolic diversity

cp_framework

Revision of Conformal Predictions Framework

datasciencecoursera

datasharing

The Leek group guide to data sharing

education

Materials for my lectures and for self-study in machine learning

evomining

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

exploratorydata

Exploratory Data

genbank-output-from-antismash-processing

This script manipulates the antiSMASH (http://antismash.secondarymetabolites.org/) output GenBank cluster files

github-slideshow

A robot powered training repository :robot:

hands-on-transfer-learning-with-python

Deep learning simplified by transferring prior learning using the Python deep learning ecosystem

keras-adabound

AdaBound optimizer in Keras

keras-resources

Directory of tutorials and open-source code repositories for working with Keras, the Python deep learning library

learn-wdl

Educational materials for learning WDL

machine-learning

machine-learning-collection

PyTorch Tutorials, TensorFlow Tutorials and Machine Learning Algorithms

markdown-cheatsheet

Markdown Cheatsheet for Github Readme.md

ngboost

Natural Gradient Boosting for Probabilistic Prediction

prodigal

Prodigal Gene Prediction Software