Comments (4)
bjclavijo
commented on July 21, 2024
1
This functionality is provided by hbv2gfa in older branches and will be provided directly in the next release.
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bjclavijo
commented on July 21, 2024
Hi Shaun, I am working on this, it is actually quite helpful to use GFA as an exchange format. Next updated version (quite soon, I hope) will have some GFA support, even if not perfect.
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bjclavijo
commented on July 21, 2024
Leaving this open till the support is on the main branch and tested...
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sjackman
commented on July 21, 2024
That's great! Thanks, Bernardo. I'm excited to see more interoperability between assembler pipelines.
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Related Issues (20)
- Step 1 Speed for w2rap contigger HOT 3
- Illegal involution value HOT 3
- Step 3 crashed HOT 1
- K parameter determination HOT 5
- denoising Illumina reads HOT 1
- Check step2 counting using large number of batches
- Having trouble with preoccupied kmers HOT 7
- Resume checkpoints in w2rap-contigger? HOT 2
- errors when compiling with gcc-8 in MacOS HOT 1
- w2rap-contigger memory issues / advices to run w2rap HOT 9
- Segfault during Step 6: removing small components HOT 7
- Read lengths and large K HOT 1
- Installation error HOT 6
- Segmentation fault in Step 5 HOT 1
- Can w2rap-contigger use for non-PCR-free NGS assembling? HOT 1
- More details on w2rap-contigger step 5 needed - run with 100bp PE short reads (Illumina) HOT 1
- No error message (34045 Aborted) HOT 2
- Step 3 crash HOT 1
- help with compiling on Mac OS
- step2 crashed
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