Comments (4)
Hi,
It is not supposed to change the REF allele to ALT for duplications. I am looking at your vcf before combine and it looks like all the ALT sequences are missing. Is this correct? If so then it might be a bug. Would it be possible for you to share a vcf with the above lines and the header?
Thanks,
Jonas
from bayestyper.
Hi Jonas,
Sorry the ALT sequences should not be missing, that is my fault. However, the REF allele really been changed.
Here are my my vcf files head lines.
Best regards,
Zhiyong
My original vcf head lines:
##fileformat=VCFv4.3
##fileDate=20210112
##source=syri
##ALT=<ID=SYN,Description="Syntenic region">
##ALT=<ID=INV,Description="Inversion">
##ALT=<ID=TRANS,Description="Translocation">
##ALT=<ID=INVTR,Description="Inverted Translocation">
##ALT=<ID=DUP,Description="Duplication">
##ALT=<ID=INVDP,Description="Inverted Duplication">
##ALT=<ID=SYNAL,Description="Syntenic alignment">
##ALT=<ID=INVAL,Description="Inversion alignment">
##ALT=<ID=TRANSAL,Description="Translocation alignment">
##ALT=<ID=INVTRAL,Description="Inverted Translocation alignment">
##ALT=<ID=DUPAL,Description="Duplication alignment">
##ALT=<ID=INVDPAL,Description="Inverted Duplication alignment">
##ALT=<ID=HDR,Description="Highly diverged regions">
##ALT=<ID=INS,Description="Insertion in non-reference genome">
##ALT=<ID=DEL,Description="Deletion in non-reference genome">
##ALT=<ID=CPG,Description="Copy gain in non-reference genome">
##ALT=<ID=CPL,Description="Copy loss in non-reference genome">
##ALT=<ID=SNP,Description="Single nucleotide polymorphism">
##ALT=<ID=TDM,Description="Tandem repeat">
##ALT=<ID=NOTAL,Description="Not Aligned region">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position on reference genome">
##INFO=<ID=ChrB,Number=1,Type=String,Description="Chromoosme ID on the non-reference genome">
##INFO=<ID=StartB,Number=1,Type=Integer,Description="Start position on non-reference genome">
##INFO=<ID=EndB,Number=1,Type=Integer,Description="End position on non-reference genome">
##INFO=<ID=Parent,Number=1,Type=String,Description="ID of the parent SR">
##INFO=<ID=VarType,Number=1,Type=String,Description="Start position on non-reference genome">
##INFO=<ID=DupType,Number=1,Type=String,Description="Copy gain or loss in the non-reference genome">
#CHROM POS ID REF ALT QUAL FILTER INFO
chr2 1 NOTAL1 N <NOTAL> . PASS END=3105;ChrB=.;StartB=.;EndB=.;Parent=.;VarType=.;DupType=.
chr2 3106 DUP6079 N <DUP> . PASS END=11964;ChrB=chr2;StartB=71745602;EndB=71754416;Parent=.;VarType=SR;DupType=copyloss
My vcf after convert:
##fileformat=VCFv4.2
##ALT=<ID=CPG,Description="Copy gain in non-reference genome">
##ALT=<ID=CPL,Description="Copy loss in non-reference genome">
##ALT=<ID=DEL,Description="Deletion in non-reference genome">
##ALT=<ID=DUP,Description="Duplication">
##ALT=<ID=DUPAL,Description="Duplication alignment">
##ALT=<ID=HDR,Description="Highly diverged regions">
##ALT=<ID=INS,Description="Insertion in non-reference genome">
##ALT=<ID=INV,Description="Inversion">
##ALT=<ID=INVAL,Description="Inversion alignment">
##ALT=<ID=INVDP,Description="Inverted Duplication">
##ALT=<ID=INVDPAL,Description="Inverted Duplication alignment">
##ALT=<ID=INVTR,Description="Inverted Translocation">
##ALT=<ID=INVTRAL,Description="Inverted Translocation alignment">
##ALT=<ID=NOTAL,Description="Not Aligned region">
##ALT=<ID=SNP,Description="Single nucleotide polymorphism">
##ALT=<ID=SYN,Description="Syntenic region">
##ALT=<ID=SYNAL,Description="Syntenic alignment">
##ALT=<ID=TDM,Description="Tandem repeat">
##ALT=<ID=TRANS,Description="Translocation">
##ALT=<ID=TRANSAL,Description="Translocation alignment">
##INFO=<ID=ChrB,Number=1,Type=String,Description="Chromoosme ID on the non-reference genome">
##INFO=<ID=DupType,Number=1,Type=String,Description="Copy gain or loss in the non-reference genome">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position on reference genome">
##INFO=<ID=EndB,Number=1,Type=Integer,Description="End position on non-reference genome">
##INFO=<ID=Parent,Number=1,Type=String,Description="ID of the parent SR">
##INFO=<ID=StartB,Number=1,Type=Integer,Description="Start position on non-reference genome">
##INFO=<ID=VarType,Number=1,Type=String,Description="Start position on non-reference genome">
##contig=<ID=chr2,length=244442276>
##fileDate=20210112
##source=syri
#CHROM POS ID REF ALT QUAL FILTER INFO
chr2 3106 DUP6079 CTTCGGTCCTGCGGAAGGCAAAGGTACAAGCGTGATGCGAAAGCAAATGACAGGTTCACGTGAACAGTACAGAGGTACTGTTCATCTATTTATAGGCACAGGTCGCAGCCTGTGACAAATTACAATTATGCCCCTTGCGAAAGTTTATAGCATTAACTCAGACTCATATGTATAAAAAGGTCATTCTATCTCTATGTCGGTTTAAAAACGCCGAAGCTCCATGAAAAGGGACCTTCGGCCATCTCTTGGAGACGACTTCAGCCGAAGCTGCTTCTTCATGTGAGACCTTCGGCGCACCGAAGCACGACCCCAACAGTAGCCCCTTTCGCGGTGCTAGATCGTTCTTCGTAACGAGCTTGACCCGTGAAAAAAGCCTCTTCAGCTTCGGGAAGCCGAAGGTCCAAAAAACACCTTCCCTGAGCTCGTTGCGGAGAAACGATCCGACTTCCGAGCGCGTGTCGGTCCCACCTTGCAGAGTTACTGTTTGATCCTTGCGGTCCACTGCGCAGCGGGTACAAGTTACGGCGCGCCTGGTGTAACAATTCCGCCGCTTCGCCTTGTTTCCTGCAGTACTATATAAACAAGCAGGTAGGTGTAAAGTTACCACAGCATTCATTGCTATTTGCACTGTTTTGCTGCCGAAATTTTCCATCATAGCCGAAGCTTAAATCCCAAAATCGAACGAAGGTCCGTCTCGACACTTGCTTCGTCAGAAAGAAGAGCTTCGGAGAGAAGAAAAAAGTAAAAAGTTTCTGACTTCCCAAACTTAAAATCAAATGGCGAGAATTCGATCTACTGCCAAAGTTGTACGCGAGGGAGACGAAGCCGAAGGTTCAAACACTGTGCCCATCTCCGAAGCGATGCAGCGCTCCGGTCTAGTGGCTGCGGAAGAGAGGCCTGGTACCGAAGCAAACCCGACAACAGCCGAAGAAGAAAACATTGATGGGACTGACTCCGGAGATGACTACCACATGTCTACACCCAGCAAGCCCAGTCACCTGGATTTTGGAAAATCAACTGTTTCAAAGGCTGACCTTGCGAAGATGATAAAGGCAGGTTTTTTCAAAGAAGATCAAAAAAAGCTACTTCGCTTCGGAGGAGAGGAGACTACCCCGAAGCCAGAGAAGGATGAGATTGTAATTTTCAAAAGCTTTTTAAAAGCTGGGCTGAGATTTCCTCTTCATGGAATTATTGGAGATGTGTTGCAAAAGTTTGGCATTTATTTTCACCAATTGACTCCTAACGCCATTGTTAGGCTTAATGTTTATATTTGGGCTCTCCGAAGCCAAGCTGTGGAACCGTTTGCCGACAGCTTCTGCCGAGCGCACGAATTACATTACCAAACGAAGGCCAGAGCAGACGGACTACATGATAATTTCGGCTGTTACAATTTTGCCTACCGGAAGACAACAAAGTGTCCTGTTATCAGCTACCGGAGCAAATGGCCAGCAGGCTGGAAGTCTGAGTGGTTCTACGTAAAAGTTGACGAAGACAGAGAAAAATTGATACAAAGTCCTCTGGAATTAATCTTCGGAGAGACAAGGCCACACTGCCACATCGGCGATTTAAAGGGTCCTACCTGGGCCGCTCTGGGTGAATTCGAAATTATTTCAGAACATATTGGCACCAGGGATCTGGTTCAGGAATTTTTGGCATTCAGAGTTTTCCCTACTTTAAAAGAGTGGGAGATGCCGAAGCTGGAGGGAGAGAAGAAGGAGGGGGAGCTTGTTCGTCTGCCTTATCACTTTAAATTCAAGAAGTACTTTAAGAAACCCTGCAAAGAGTGGTTGGACACAGTTGAGACAATGTGCAATGAAATCTTGGGGAACTACTCCAAAAAGGAGGATCAATTAATGACAGCAGCCTTCGGCACCCGACCGAAGCGAAGGCTGAACCGAGTATTCGATGCCCTGGGCTTCGAGTATCCAGACTATGAGCAGTTGAATAAGGGTGCCGAAGGCCACAAAAGAAAAAGAGTGACTGAAATTCTGACGAAGGATGAAGAGCAACCAGCAGCAGAGAAGAAAATTCCAAAGAAAAGGAAAATATCAACTCCGAAACGGAAAATATCCAAAGAAGAGAAAACCCCCACACCGCCTTCTACTAGCGACATAGAAGAAATTTTAAAGGTAATGACTGAACCCATGCCTACGAAGCTAAGTCCACTAGGGCTCCAACTGACGAAGCTTTTTCGAAAGGTGGACGAGCCGGATCAGACGAAGACAAGCAAACCCAAGCGGCAAAGAATCATTGCGGTAACTGAAGTTATCGATAAGACGCCGCCAAGGGCGTCAATCCAAAAAACGGCAGCTGCCGAAGGTGCAGCAATTGTCGAAGGCGTAGCTTCGGGGGTCGCGGCTACCGAAGCCGCTACAGCCGAAGATACAAACTTAAAAACCACGATTACGAATATCAACAAGATTTTGGAAGACATGGCCGCGGAAGAAACTGGTGCTACTTCTGAAAAAACCATGGCCACAGTGCCTGAAAAAGGAAAAGAAATAGCCGAAGACCCTTCGGATGACGAAGCATACACTTTCCAGAACTTAGTTGGGCAAAAACTGACGAAGGAGGAAATAGAAGAACTTAAAGAATACGCCAAGTCTTGCGGGTACAAGTCAGGTGCCCTCCTATTTGGGGGTGTAGATGATGAACAACTGGGCTGCATCCGGGACTCAGCTGGGGCTAAGGTCATCGGTACTTTATCAAAGAGTATCGGTTTTCCGAAGCTGGAGTCAGACATCAGCCGCTACCGACGACAACATGTCGTTGGTAGTTTATTTTATTCTAACTTCAAGGTGAATGACTTGTTTCTTAACCTTTATTGCTTCTAATAAAAACATGACTGACGAAGGTTGTGTTTGTGTAGAGTATGCTATTGAGCAAGGCTTTGCAAATGCAGCAGGATCTTGAAGATAAAAAGCATGAAGTTATAATTGAAAATTTGGAAAACAAAATAAAGGAACAATCAGATGCTTTTGAGAAAAAGAGCTTCGAACTCCAGGCAGCCGAAGGTTTACTGGCGGAAGCTGAAGCAAAAATATTAGAACTGAACACGAAGCTTCTCCGCCAGTCTGAGCAGTTCGAACAAGAAAAACAAGATCTCAATGCAAAACTTGAAGCCGAAGCTCAGCAAAATTCGGATTTGAGAAAATTATTGACAAATCTTCAAGAAAAATGCCTAGAATTTAGCAACAAGTGCATTCAGCGACTAAGAAAGATTTTTCATTCGGTTGGAGCTAGCAGCGAAAAATTTACCCCCTCAGCTGAAGACCTACCACAAACCTTCGAACACATTGAGGGGGAAATTGACGAGCTCGACGAAGTCATAGCTGGGCATGGTGATTTCTGTGCCTGGGTAGCTTCTCGAGGGACTGCTGCAGCCTTCATGAAGGCTGGCTGTGAACATGGAAAAGTTGTTAACAGACCCACCTTCGCCTTATCTCCATCAATCCTGGATGATATGCCTGACCTTGCCCGAAGTATCTCCAACAGATTTATAAAAATGATATGGACAAAAGGCGGGCGGGAGAAGGCTGGAGATGAAGCACGAAGCCATCTTGAACCAGTAAGAGATAATACTTCGTACTTACCTTTTTCTTTGCACTTGATTTTTACTCACGGTTCCTTGATTTATGTAGGATGACGAAGGTGAAGATGATGCCTAAATTATGTCGTCGAAGCTGAAACTTAATGAAGATCAGTAGAAGTGTACTGTAGGAAAACTCAGGATATTTTTGTAACAATCCTTGTAAATACAACTAGACTATCTTCAAGGAACTTTGTACATACCTTGCAATGTATTCTTACCCTCTGCTTGAAGCGCTTTGATGTGGACGAAACCAGTATTTTGAGCCGAAGGCGAAAAACACCTTCCCTTCTTTTCGTACACAACGAAGCTTTAAAAGGTCGCTTCCTCTTTTTGCCGAAGCTTTGCTTTTTTGTACATGAAAACTACTTCTCCTTTCTGCCGAAGCTTTTCTTTACAAAACATAAAAAACTACTTCTCTTTTCTGCCGAAGCTTTCCTTTACATGACAAAACATAAAAGACTACTACTCTTTTGCACAACGATTCGTAAAAATCCAGTTCTCCCTTATACTGAACTTTTCCTTGTGCCAAAGCAACGGAACTTTTCACTTTTGCACACAACATAGCGTAATAAGTCATAAAAGGTACTTCTCCGAAGCTTTTTTGCCGAAGCAGCCACTTGGGAACACAAATGCTATGAATGAATGCTTATGCATGCGAATGTTATGATGTAATGTAATGCACGAATGAATGTCCGAAGCATATGTCCGAAGCCATATTGTCAGCCATTACTTGAAAACAACCACACATTAGCTCTGCATTCCCTTAGGAACGACTTTGGAGCTTCTTCGCCTCTTACTTAGGCAATATCAGCGTTGACTTTTCGCTGTAAGCTCTGCATCCCCTTAGGGACGTCTTTGGAGCTTCTTCGTCTTTTACTTAGACGGTATAAGCTCTGCATTCCCTTGGGAACGTCTTTGGAGCTTCTTCGTCTTTTACTTAGACGGTATAAACTCTGCATTCCCTTAGGAACGTCTTTGGAGTTTCTTCGCCTTTTACTTAGGCGGTATAAGCTCTGCATTCCCTTGGGAACGTCTTTGGAGCTTCTTCTCTTTTTTCTTTTTCAGTTTCTGCACTCGATGGTGCGTTCTCAGCTGTTACATTTACATTTTTTGGGGGATTTCGCTCTTATAAGACTAAAAAAGGAAATTACACATGATGGCCCTATTAAAAACCTTTCTCCCCCTTCGGAAAGGAAAAGGGTGCCATGAAAATGAAAAGAAAAAGCATAAAAAATTACATCATATTATACATAGTATCGCCGAAGCTCATCCGCATTCCAAGACCTTGGAATTTCGTTGCCATCCATGTCCTTCAATCTGTATGATCCAGGCCTTGACGAAGATACTACTAAGAATGGTCCTTCCCATTTCAACTGTAGCTTACCCACTGTATCTGGGTTAGCCACTCTCCGAAGCACCAAGTGTCCCGGCTCAATATTTTTTAGCCGGACTTTTCTATCTCGCCATTTGACTGTTTCAGCCTGATATTTATTAATATTCTCCACGGCCTGAAGCCTGATCCCCTCTAAAGCATCTTTTTCCACAAGATAAGCATCTTCGGGGCCTGATTCTGCCGAAGCTACTACTCTTACTGACCCAGCTTTTGCTTCCTCCGGAGTTATTGCTTCGTCACCGAATAATAATTTGAATGGGGTAAAGCCTGTAGACCTTGATGTTGTTGTATTGTGGCTCCACACCACTTTGATTAACTGATCTGGCCACTTTCCCCTGGGTTGATTGAAGATTAACTTCATTATTCCTGTCATTATAATGCCGTTGGCCCTTTCAACGAGCCCATTTGACTCCGGATGCCTGACTGACGCAAAATGGATCTTCGTTCCGATTTGATTACAGAAGTCTCTGAAAGCTTCGGAGTCAAACTGCGTTCCATTATCTACAGTAATTGCCTTCGGTACCCCGAAGCGACAGACAATATTCTGCCAGAAAAACTTTTGGACAGTGGCTGAAGTTATTGTGGCCAATGGCTTCGCCTCAATCCACTTGGAAAAATACTCCACAGCCACTATAACATATTTTAGATTCCCTTGAGCCGGTGGTAATGGGCCCAACAAGTCAAGGCCCCACCTTTGCAATGGCCAGATGGGTTGTATCAGCTGTGTTAAAGACGAAGGTTGTTTTTGATCTCTTGCACATTTCTGACAACCTTCGCACTTTTGCACTAACTCCGCTGCATCCGAAGCTGCCTTCGGCCAATAAAATCCTTGGCGGAAGACTTTCCCAAGTAATGGCCTAGATCCAATGTGGGATCCACACAGGCCTGCATGTATCTCTTTCATCAACTCTATACCTTCGGCTCTAGATAAGCACTTGAGCAGCGGAGCACAAACTCCATGTTTGTATAATTCCCCTTCTATCATGACATACGGACGAGCTCTTGCCTCTATTCTTTTATTGTAAGCTTCGTCATCTGAAAGGGACTTACCCTGAAGGTAAGAGATTATTTCAGTTCTCCAATCTTCGCTGTAAACAGGAGATATGTTGAGGACTGCTCTTTCAAGGAGCTCCACTGAAGGTGCCTTTATTGTTTCGAAAAACACATCCGAGGGTAACGGCAGCCCCTGTGCCGCAGACTTAGCTAGCAAATCAGCATGCTCATTTTGTCCTCGAGGAATATTCTTGACCGAGAATCCTTCGAAGGATGCCTCGATCCTTCGGACCGTATCTAGATACTTTTCAAGCTTCGGATCTTTAGCTTTGCAACTTTTGTCAACATGACCCGAAACCACCTGGGAATCAGTTTTAAGAATTGCCCTTCTGATTCCCATTGCCTTTAATTTCCGAAGGCCCAAAAGCAGGGCTTCGTACTCAGCAATATTGTTCGTGCAGCTGAAATCAAGTCTTGCTGCGTAACAAGTTTTGACATTGGATGGTGAAACCAACACAGCAGCTGCACCTGCTCCGAAGATTCCCCAAGAGCCATCACAAAACACTGTCCACACTTCGGCATCTTTATTTGCTTCTTCATCCTTCGCCCCTGGTGTCCAGTCGGCAATGAAATCTGCCAATGCTTGAGACTGGATCGAAGATCTATGCACATAATCAATGTAAAATTCGTTGAGCTCTGCAGCCCATTTCCCAATCCGTCCAGTAGCTTCTCTATTTCTCATTATATCCTTCAACGGCTGCGAAGAAGGAACAATGATATTGTATGCCTGAAAATAATGCCGAAGCTTCCTGGATGCCATTAAAACGGCATATAATACCTTCTCCAGCTCTGTATAATTTTTCTTTGAGACACTAAGGACCTCAGATACAAAGTACACTGGAACTTGCTTCTTAAGCTGGCCATAAAGCTTCTCCTGGACAAGCGCCGCACTTACTGCTGAGTGCGAAGCTGCCACATATAACAACAGAGGAGCCCCTGGCGTTGGCGGAGTTAATGTTGTGAGATCTATCAAGTATTGCTTCAACTCTTCGAAGGCTTTTTGTTGACTTGGGCCCCATTGAAAGACTTCGGCTGACTTCAGCACCTCGAAGAATGGTAAGTTTCTTTCTGCTGATCTGGATATAAATCTGTTGAGAGATGCTAGCCTTCCTGTCAATCTTTGGGCCCCTTTTCTTGTAGTTGGTGGCTCCATTCGAAGTATAGCTTCGATTTTATTTGGATTAGCTTCGATTCCCTTTGTTGAAACTAAGCATCCAAGAAATTTACCCTTCTTTACTCCGAAGACACATTTCTCTGGATTCAGCTTCAGACCAGCTTGTCTGAAGCTGGCGAAGGTCTCCTGCAGATCAGCAATATGGTCCTCTTGCTTCGTGCTTTTGACGATAATGTCATCAACATAGGTCAACACATTTCTACCTATTTGAGACTGGAGAACCTTCGCAGTCATTCTGCTGAAACTTCCTCCAGCGTTTTTGAGCCCCTCAGGCATCCGAAGATAGCAATACGTGCCACTTGGAGTTATGAAGCTAGTTTTCGGCTCATCTTCCTTTTTCATCCAGATTTGATGATATCCTGAGTAACAGTCCAAGAGACTCATGAGCTCTGAAGAAGCTGCTGCATCGACTAGAGAGTCTATCCTTGGCAACGGGAATTCGTCCTTCGGACAAGCTTTGTTGAGATCTGTGAAATCGATACACATTCTCCACTTGCCATTGGCCTTCTTCACCATAACAGTGTTAGCTAGCCACTCTGGGTACTTCACTTCTCTGATAACTCCTGCACTGAGGAGTCTTTTTACTTCGTTGCGAGCCCCTTCGGCCTTGTCATCAGACATTTTCCGAAGCCTCTGCTTTCGGGGTCTAAAGGATGGGTCAACATTGAGCGAATGTTCAATAACATCCCGGTTTACTCCACAGAGATCATTAGCCGACCATGCAAAAACATCTTTGTTGTTGAATAAAAACCTTATCAAGGTTTTCTCCTGGTCTTCAGATAACTGCGAGCCCAACAGCACCTTCTGATCTGCTATGTCTTCGCACAATAGCATGGGCTTCGGCTGATCAGCCGAAGCTGCTTTTTCCCTCCTGAACTTGTACTGTTCACAAGCTTCAACTCCATCTATATTATGGATTGCCTTGGAATCAGTCCAGCTTCCTTCGGCCCTTCTGGCAGCTTCCTGACTCCCATGAATAGCAATAGGCCCTTGGTCCGAAGGTATCTTCATGCAGAGATAAGCTGGGTGAAGAATTGCTTCAAAAGCATTTAGGGTACCACGACCAATGATGGCGTTGTAGGGGTATTCCATGTCAACAATATCAAACACAATTTGCTCAGTCCTTGTGTTATTAACAAATCCGAAGGTTACCGGCATGGTAATCTTCCCGAGTGCCACAATCTGTCGCCCTCCGAAGCCACAAAGAGGGTGCGTAGCATCATGAATCTTGTCTTCAGGCTCTTGCATCTGTCTGAAGGCTTTGGCAAATATGATGTCAGCTGCACTGCCTGTGTCGACCAAGACATTGTGGACCAGAAATCCTTTGATAACACAAGAGATAACCATGGCATCATTGTGTGGGTAATCTTTAAGCTGAAGGTCCTCTTGGGAGAAGGTAATTGGAATGTGAGACCATTTTGACTTAATGAAGGGTCCCTGCACGCCAACATGCTGCACCCTTCTCTGAGCCTCCTTCTTCTGCCTTTTGTTAGCTGGCTCTGAGCAAGAACCGCCTGTTATCGGGAGCACCAGCTTCGAAGCCGAAGCAGCTCCAGCTTGAGTGTTGAACGAAGCCATCAGCTCAGAAAGGTGGAAGTGAGTTGACCGGAGGTGGGCGCCAATGTTGGGGACTTGTTCTCAAATGCT CTTCGGTCCTGCGGAAGGCAAAGGTACAAGCGTGATGCGAAAGCAAATGACAGGTTCACGTGAACAGTACAGAGGTACTGTTCATCTATTTATAGGCACAGGTCGCAGCCTGTGACAAATTACAATTATGCCCCTTGCGAAAGTTTATAGCATTAACTCAGACTCATATGTATAAAAAGGTCATTCTATCTCTATGTCGGTTTAAAAACGCCGAAGCTCCATGAAAAGGGACCTTCGGCCATCTCTTGGAGACGACTTCAGCCGAAGCTGCTTCTTCATGTGAGACCTTCGGCGCACCGAAGCACGACCCCAACAGTAGCCCCTTTCGCGGTGCTAGATCGTTCTTCGTAACGAGCTTGACCCGTGAAAAAAGCCTCTTCAGCTTCGGGAAGCCGAAGGTCCAAAAAACACCTTCCCTGAGCTCGTTGCGGAGAAACGATCCGACTTCCGAGCGCGTGTCGGTCCCACCTTGCAGAGTTACTGTTTGATCCTTGCGGTCCACTGCGCAGCGGGTACAAGTTACGGCGCGCCTGGTGTAACAATTCCGCCGCTTCGCCTTGTTTCCTGCAGTACTATATAAACAAGCAGGTAGGTGTAAAGTTACCACAGCATTCATTGCTATTTGCACTGTTTTGCTGCCGAAATTTTCCATCATAGCCGAAGCTTAAATCCCAAAATCGAACGAAGGTCCGTCTCGACACTTGCTTCGTCAGAAAGAAGAGCTTCGGAGAGAAGAAAAAAGTAAAAAGTTTCTGACTTCCCAAACTTAAAATCAAATGGCGAGAATTCGATCTACTGCCAAAGTTGTACGCGAGGGAGACGAAGCCGAAGGTTCAAACACTGTGCCCATCTCCGAAGCGATGCAGCGCTCCGGTCTAGTGGCTGCGGAAGAGAGGCCTGGTACCGAAGCAAACCCGACAACAGCCGAAGAAGAAAACATTGATGGGACTGACTCCGGAGATGACTACCACATGTCTACACCCAGCAAGCCCAGTCACCTGGATTTTGGAAAATCAACTGTTTCAAAGGCTGACCTTGCGAAGATGATAAAGGCAGGTTTTTTCAAAGAAGATCAAAAAAAGCTACTTCGCTTCGGAGGAGAGGAGACTACCCCGAAGCCAGAGAAGGATGAGATTGTAATTTTCAAAAGCTTTTTAAAAGCTGGGCTGAGATTTCCTCTTCATGGAATTATTGGAGATGTGTTGCAAAAGTTTGGCATTTATTTTCACCAATTGACTCCTAACGCCATTGTTAGGCTTAATGTTTATATTTGGGCTCTCCGAAGCCAAGCTGTGGAACCGTTTGCCGACAGCTTCTGCCGAGCGCACGAATTACATTACCAAACGAAGGCCAGAGCAGACGGACTACATGATAATTTCGGCTGTTACAATTTTGCCTACCGGAAGACAACAAAGTGTCCTGTTATCAGCTACCGGAGCAAATGGCCAGCAGGCTGGAAGTCTGAGTGGTTCTACGTAAAAGTTGACGAAGACAGAGAAAAATTGATACAAAGTCCTCTGGAATTAATCTTCGGAGAGACAAGGCCACACTGCCACATCGGCGATTTAAAGGGTCCTACCTGGGCCGCTCTGGGTGAATTCGAAATTATTTCAGAACATATTGGCACCAGGGATCTGGTTCAGGAATTTTTGGCATTCAGAGTTTTCCCTACTTTAAAAGAGTGGGAGATGCCGAAGCTGGAGGGAGAGAAGAAGGAGGGGGAGCTTGTTCGTCTGCCTTATCACTTTAAATTCAAGAAGTACTTTAAGAAACCCTGCAAAGAGTGGTTGGACACAGTTGAGACAATGTGCAATGAAATCTTGGGGAACTACTCCAAAAAGGAGGATCAATTAATGACAGCAGCCTTCGGCACCCGACCGAAGCGAAGGCTGAACCGAGTATTCGATGCCCTGGGCTTCGAGTATCCAGACTATGAGCAGTTGAATAAGGGTGCCGAAGGCCACAAAAGAAAAAGAGTGACTGAAATTCTGACGAAGGATGAAGAGCAACCAGCAGCAGAGAAGAAAATTCCAAAGAAAAGGAAAATATCAACTCCGAAACGGAAAATATCCAAAGAAGAGAAAACCCCCACACCGCCTTCTACTAGCGACATAGAAGAAATTTTAAAGGTAATGACTGAACCCATGCCTACGAAGCTAAGTCCACTAGGGCTCCAACTGACGAAGCTTTTTCGAAAGGTGGACGAGCCGGATCAGACGAAGACAAGCAAACCCAAGCGGCAAAGAATCATTGCGGTAACTGAAGTTATCGATAAGACGCCGCCAAGGGCGTCAATCCAAAAAACGGCAGCTGCCGAAGGTGCAGCAATTGTCGAAGGCGTAGCTTCGGGGGTCGCGGCTACCGAAGCCGCTACAGCCGAAGATACAAACTTAAAAACCACGATTACGAATATCAACAAGATTTTGGAAGACATGGCCGCGGAAGAAACTGGTGCTACTTCTGAAAAAACCATGGCCACAGTGCCTGAAAAAGGAAAAGAAATAGCCGAAGACCCTTCGGATGACGAAGCATACACTTTCCAGAACTTAGTTGGGCAAAAACTGACGAAGGAGGAAATAGAAGAACTTAAAGAATACGCCAAGTCTTGCGGGTACAAGTCAGGTGCCCTCCTATTTGGGGGTGTAGATGATGAACAACTGGGCTGCATCCGGGACTCAGCTGGGGCTAAGGTCATCGGTACTTTATCAAAGAGTATCGGTTTTCCGAAGCTGGAGTCAGACATCAGCCGCTACCGACGACAACATGTCGTTGGTAGTTTATTTTATTCTAACTTCAAGGTGAATGACTTGTTTCTTAACCTTTATTGCTTCTAATAAAAACATGACTGACGAAGGTTGTGTTTGTGTAGAGTATGCTATTGAGCAAGGCTTTGCAAATGCAGCAGGATCTTGAAGATAAAAAGCATGAAGTTATAATTGAAAATTTGGAAAACAAAATAAAGGAACAATCAGATGCTTTTGAGAAAAAGAGCTTCGAACTCCAGGCAGCCGAAGGTTTACTGGCGGAAGCTGAAGCAAAAATATTAGAACTGAACACGAAGCTTCTCCGCCAGTCTGAGCAGTTCGAACAAGAAAAACAAGATCTCAATGCAAAACTTGAAGCCGAAGCTCAGCAAAATTCGGATTTGAGAAAATTATTGACAAATCTTCAAGAAAAATGCCTAGAATTTAGCAACAAGTGCATTCAGCGACTAAGAAAGATTTTTCATTCGGTTGGAGCTAGCAGCGAAAAATTTACCCCCTCAGCTGAAGACCTACCACAAACCTTCGAACACATTGAGGGGGAAATTGACGAGCTCGACGAAGTCATAGCTGGGCATGGTGATTTCTGTGCCTGGGTAGCTTCTCGAGGGACTGCTGCAGCCTTCATGAAGGCTGGCTGTGAACATGGAAAAGTTGTTAACAGACCCACCTTCGCCTTATCTCCATCAATCCTGGATGATATGCCTGACCTTGCCCGAAGTATCTCCAACAGATTTATAAAAATGATATGGACAAAAGGCGGGCGGGAGAAGGCTGGAGATGAAGCACGAAGCCATCTTGAACCAGTAAGAGATAATACTTCGTACTTACCTTTTTCTTTGCACTTGATTTTTACTCACGGTTCCTTGATTTATGTAGGATGACGAAGGTGAAGATGATGCCTAAATTATGTCGTCGAAGCTGAAACTTAATGAAGATCAGTAGAAGTGTACTGTAGGAAAACTCAGGATATTTTTGTAACAATCCTTGTAAATACAACTAGACTATCTTCAAGGAACTTTGTACATACCTTGCAATGTATTCTTACCCTCTGCTTGAAGCGCTTTGATGTGGACGAAACCAGTATTTTGAGCCGAAGGCGAAAAACACCTTCCCTTCTTTTCGTACACAACGAAGCTTTAAAAGGTCGCTTCCTCTTTTTGCCGAAGCTTTGCTTTTTTGTACATGAAAACTACTTCTCCTTTCTGCCGAAGCTTTTCTTTACAAAACATAAAAAACTACTTCTCTTTTCTGCCGAAGCTTTCCTTTACATGACAAAACATAAAAGACTACTACTCTTTTGCACAACGATTCGTAAAAATCCAGTTCTCCCTTATACTGAACTTTTCCTTGTGCCAAAGCAACGGAACTTTTCACTTTTGCACACAACATAGCGTAATAAGTCATAAAAGGTACTTCTCCGAAGCTTTTTTGCCGAAGCAGCCACTTGGGAACACAAATGCTATGAATGAATGCTTATGCATGCGAATGTTATGATGTAATGTAATGCACGAATGAATGTCCGAAGCATATGTCCGAAGCCATATTGTCAGCCATTACTTGAAAACAACCACACATTAGCTCTGCATTCCCTTAGGAACGACTTTGGAGCTTCTTCGCCTCTTACTTAGGCAATATCAGCGTTGACTTTTCGCTGTAAGCTCTGCATCCCCTTAGGGACGTCTTTGGAGCTTCTTCGTCTTTTACTTAGACGGTATAAGCTCTGCATTCCCTTGGGAACGTCTTTGGAGCTTCTTCGTCTTTTACTTAGACGGTATAAACTCTGCATTCCCTTAGGAACGTCTTTGGAGTTTCTTCGCCTTTTACTTAGGCGGTATAAGCTCTGCATTCCCTTGGGAACGTCTTTGGAGCTTCTTCTCTTTTTTCTTTTTCAGTTTCTGCACTCGATGGTGCGTTCTCAGCTGTTACATTTACATTTTTTGGGGGATTTCGCTCTTATAAGACTAAAAAAGGAAATTACACATGATGGCCCTATTAAAAACCTTTCTCCCCCTTCGGAAAGGAAAAGGGTGCCATGAAAATGAAAAGAAAAAGCATAAAAAATTACATCATATTATACATAGTATCGCCGAAGCTCATCCGCATTCCAAGACCTTGGAATTTCGTTGCCATCCATGTCCTTCAATCTGTATGATCCAGGCCTTGACGAAGATACTACTAAGAATGGTCCTTCCCATTTCAACTGTAGCTTACCCACTGTATCTGGGTTAGCCACTCTCCGAAGCACCAAGTGTCCCGGCTCAATATTTTTTAGCCGGACTTTTCTATCTCGCCATTTGACTGTTTCAGCCTGATATTTATTAATATTCTCCACGGCCTGAAGCCTGATCCCCTCTAAAGCATCTTTTTCCACAAGATAAGCATCTTCGGGGCCTGATTCTGCCGAAGCTACTACTCTTACTGACCCAGCTTTTGCTTCCTCCGGAGTTATTGCTTCGTCACCGAATAATAATTTGAATGGGGTAAAGCCTGTAGACCTTGATGTTGTTGTATTGTGGCTCCACACCACTTTGATTAACTGATCTGGCCACTTTCCCCTGGGTTGATTGAAGATTAACTTCATTATTCCTGTCATTATAATGCCGTTGGCCCTTTCAACGAGCCCATTTGACTCCGGATGCCTGACTGACGCAAAATGGATCTTCGTTCCGATTTGATTACAGAAGTCTCTGAAAGCTTCGGAGTCAAACTGCGTTCCATTATCTACAGTAATTGCCTTCGGTACCCCGAAGCGACAGACAATATTCTGCCAGAAAAACTTTTGGACAGTGGCTGAAGTTATTGTGGCCAATGGCTTCGCCTCAATCCACTTGGAAAAATACTCCACAGCCACTATAACATATTTTAGATTCCCTTGAGCCGGTGGTAATGGGCCCAACAAGTCAAGGCCCCACCTTTGCAATGGCCAGATGGGTTGTATCAGCTGTGTTAAAGACGAAGGTTGTTTTTGATCTCTTGCACATTTCTGACAACCTTCGCACTTTTGCACTAACTCCGCTGCATCCGAAGCTGCCTTCGGCCAATAAAATCCTTGGCGGAAGACTTTCCCAAGTAATGGCCTAGATCCAATGTGGGATCCACACAGGCCTGCATGTATCTCTTTCATCAACTCTATACCTTCGGCTCTAGATAAGCACTTGAGCAGCGGAGCACAAACTCCATGTTTGTATAATTCCCCTTCTATCATGACATACGGACGAGCTCTTGCCTCTATTCTTTTATTGTAAGCTTCGTCATCTGAAAGGGACTTACCCTGAAGGTAAGAGATTATTTCAGTTCTCCAATCTTCGCTGTAAACAGGAGATATGTTGAGGACTGCTCTTTCAAGGAGCTCCACTGAAGGTGCCTTTATTGTTTCGAAAAACACATCCGAGGGTAACGGCAGCCCCTGTGCCGCAGACTTAGCTAGCAAATCAGCATGCTCATTTTGTCCTCGAGGAATATTCTTGACCGAGAATCCTTCGAAGGATGCCTCGATCCTTCGGACCGTATCTAGATACTTTTCAAGCTTCGGATCTTTAGCTTTGCAACTTTTGTCAACATGACCCGAAACCACCTGGGAATCAGTTTTAAGAATTGCCCTTCTGATTCCCATTGCCTTTAATTTCCGAAGGCCCAAAAGCAGGGCTTCGTACTCAGCAATATTGTTCGTGCAGCTGAAATCAAGTCTTGCTGCGTAACAAGTTTTGACATTGGATGGTGAAACCAACACAGCAGCTGCACCTGCTCCGAAGATTCCCCAAGAGCCATCACAAAACACTGTCCACACTTCGGCATCTTTATTTGCTTCTTCATCCTTCGCCCCTGGTGTCCAGTCGGCAATGAAATCTGCCAATGCTTGAGACTGGATCGAAGATCTATGCACATAATCAATGTAAAATTCGTTGAGCTCTGCAGCCCATTTCCCAATCCGTCCAGTAGCTTCTCTATTTCTCATTATATCCTTCAACGGCTGCGAAGAAGGAACAATGATATTGTATGCCTGAAAATAATGCCGAAGCTTCCTGGATGCCATTAAAACGGCATATAATACCTTCTCCAGCTCTGTATAATTTTTCTTTGAGACACTAAGGACCTCAGATACAAAGTACACTGGAACTTGCTTCTTAAGCTGGCCATAAAGCTTCTCCTGGACAAGCGCCGCACTTACTGCTGAGTGCGAAGCTGCCACATATAACAACAGAGGAGCCCCTGGCGTTGGCGGAGTTAATGTTGTGAGATCTATCAAGTATTGCTTCAACTCTTCGAAGGCTTTTTGTTGACTTGGGCCCCATTGAAAGACTTCGGCTGACTTCAGCACCTCGAAGAATGGTAAGTTTCTTTCTGCTGATCTGGATATAAATCTGTTGAGAGATGCTAGCCTTCCTGTCAATCTTTGGGCCCCTTTTCTTGTAGTTGGTGGCTCCATTCGAAGTATAGCTTCGATTTTATTTGGATTAGCTTCGATTCCCTTTGTTGAAACTAAGCATCCAAGAAATTTACCCTTCTTTACTCCGAAGACACATTTCTCTGGATTCAGCTTCAGACCAGCTTGTCTGAAGCTGGCGAAGGTCTCCTGCAGATCAGCAATATGGTCCTCTTGCTTCGTGCTTTTGACGATAATGTCATCAACATAGGTCAACACATTTCTACCTATTTGAGACTGGAGAACCTTCGCAGTCATTCTGCTGAAACTTCCTCCAGCGTTTTTGAGCCCCTCAGGCATCCGAAGATAGCAATACGTGCCACTTGGAGTTATGAAGCTAGTTTTCGGCTCATCTTCCTTTTTCATCCAGATTTGATGATATCCTGAGTAACAGTCCAAGAGACTCATGAGCTCTGAAGAAGCTGCTGCATCGACTAGAGAGTCTATCCTTGGCAACGGGAATTCGTCCTTCGGACAAGCTTTGTTGAGATCTGTGAAATCGATACACATTCTCCACTTGCCATTGGCCTTCTTCACCATAACAGTGTTAGCTAGCCACTCTGGGTACTTCACTTCTCTGATAACTCCTGCACTGAGGAGTCTTTTTACTTCGTTGCGAGCCCCTTCGGCCTTGTCATCAGACATTTTCCGAAGCCTCTGCTTTCGGGGTCTAAAGGATGGGTCAACATTGAGCGAATGTTCAATAACATCCCGGTTTACTCCACAGAGATCATTAGCCGACCATGCAAAAACATCTTTGTTGTTGAATAAAAACCTTATCAAGGTTTTCTCCTGGTCTTCAGATAACTGCGAGCCCAACAGCACCTTCTGATCTGCTATGTCTTCGCACAATAGCATGGGCTTCGGCTGATCAGCCGAAGCTGCTTTTTCCCTCCTGAACTTGTACTGTTCACAAGCTTCAACTCCATCTATATTATGGATTGCCTTGGAATCAGTCCAGCTTCCTTCGGCCCTTCTGGCAGCTTCCTGACTCCCATGAATAGCAATAGGCCCTTGGTCCGAAGGTATCTTCATGCAGAGATAAGCTGGGTGAAGAATTGCTTCAAAAGCATTTAGGGTACCACGACCAATGATGGCGTTGTAGGGGTATTCCATGTCAACAATATCAAACACAATTTGCTCAGTCCTTGTGTTATTAACAAATCCGAAGGTTACCGGCATGGTAATCTTCCCGAGTGCCACAATCTGTCGCCCTCCGAAGCCACAAAGAGGGTGCGTAGCATCATGAATCTTGTCTTCAGGCTCTTGCATCTGTCTGAAGGCTTTGGCAAATATGATGTCAGCTGCACTGCCTGTGTCGACCAAGACATTGTGGACCAGAAATCCTTTGATAACACAAGAGATAACCATGGCATCATTGTGTGGGTAATCTTTAAGCTGAAGGTCCTCTTGGGAGAAGGTAATTGGAATGTGAGACCATTTTGACTTAATGAAGGGTCCCTGCACGCCAACATGCTGCACCCTTCTCTGAGCCTCCTTCTTCTGCCTTTTGTTAGCTGGCTCTGAGCAAGAACCGCCTGTTATCGGGAGCACCAGCTTCGAAGCCGAAGCAGCTCCAGCTTGAGTGTTGAACGAAGCCATCAGCTCAGAAAGGTGGAAGTGAGTTGACCGGAGGTGGGCGCCAATGTTGGGGACTTGTTCTCAAATGCTTTCGGTCCTGCGGAAGGCAAAGGTACAAGCGTGATGCGAAAGCAAATGACAGGTTCACGTGAACAGTACAGAGGTACTGTTCATCTATTTATAGGCACAGGTCGCAGCCTGTGACAAATTACAATTATGCCCCTTGCGAAAGTTTATAGCATTAACTCAGACTCATATGTATAAAAAGGTCATTCTATCTCTATGTCGGTTTAAAAACGCCGAAGCTCCATGAAAAGGGACCTTCGGCCATCTCTTGGAGACGACTTCAGCCGAAGCTGCTTCTTCATGTGAGACCTTCGGCGCACCGAAGCACGACCCCAACAGTAGCCCCTTTCGCGGTGCTAGATCGTTCTTCGTAACGAGCTTGACCCGTGAAAAAAGCCTCTTCAGCTTCGGGAAGCCGAAGGTCCAAAAAACACCTTCCCTGAGCTCGTTGCGGAGAAACGATCCGACTTCCGAGCGCGTGTCGGTCCCACCTTGCAGAGTTACTGTTTGATCCTTGCGGTCCACTGCGCAGCGGGTACAAGTTACGGCGCGCCTGGTGTAACAATTCCGCCGCTTCGCCTTGTTTCCTGCAGTACTATATAAACAAGCAGGTAGGTGTAAAGTTACCACAGCATTCATTGCTATTTGCACTGTTTTGCTGCCGAAATTTTCCATCATAGCCGAAGCTTAAATCCCAAAATCGAACGAAGGTCCGTCTCGACACTTGCTTCGTCAGAAAGAAGAGCTTCGGAGAGAAGAAAAAAGTAAAAAGTTTCTGACTTCCCAAACTTAAAATCAAATGGCGAGAATTCGATCTACTGCCAAAGTTGTACGCGAGGGAGACGAAGCCGAAGGTTCAAACACTGTGCCCATCTCCGAAGCGATGCAGCGCTCCGGTCTAGTGGCTGCGGAAGAGAGGCCTGGTACCGAAGCAAACCCGACAACAGCCGAAGAAGAAAACATTGATGGGACTGACTCCGGAGATGACTACCACATGTCTACACCCAGCAAGCCCAGTCACCTGGATTTTGGAAAATCAACTGTTTCAAAGGCTGACCTTGCGAAGATGATAAAGGCAGGTTTTTTCAAAGAAGATCAAAAAAAGCTACTTCGCTTCGGAGGAGAGGAGACTACCCCGAAGCCAGAGAAGGATGAGATTGTAATTTTCAAAAGCTTTTTAAAAGCTGGGCTGAGATTTCCTCTTCATGGAATTATTGGAGATGTGTTGCAAAAGTTTGGCATTTATTTTCACCAATTGACTCCTAACGCCATTGTTAGGCTTAATGTTTATATTTGGGCTCTCCGAAGCCAAGCTGTGGAACCGTTTGCCGACAGCTTCTGCCGAGCGCACGAATTACATTACCAAACGAAGGCCAGAGCAGACGGACTACATGATAATTTCGGCTGTTACAATTTTGCCTACCGGAAGACAACAAAGTGTCCTGTTATCAGCTACCGGAGCAAATGGCCAGCAGGCTGGAAGTCTGAGTGGTTCTACGTAAAAGTTGACGAAGACAGAGAAAAATTGATACAAAGTCCTCTGGAATTAATCTTCGGAGAGACAAGGCCACACTGCCACATCGGCGATTTAAAGGGTCCTACCTGGGCCGCTCTGGGTGAATTCGAAATTATTTCAGAACATATTGGCACCAGGGATCTGGTTCAGGAATTTTTGGCATTCAGAGTTTTCCCTACTTTAAAAGAGTGGGAGATGCCGAAGCTGGAGGGAGAGAAGAAGGAGGGGGAGCTTGTTCGTCTGCCTTATCACTTTAAATTCAAGAAGTACTTTAAGAAACCCTGCAAAGAGTGGTTGGACACAGTTGAGACAATGTGCAATGAAATCTTGGGGAACTACTCCAAAAAGGAGGATCAATTAATGACAGCAGCCTTCGGCACCCGACCGAAGCGAAGGCTGAACCGAGTATTCGATGCCCTGGGCTTCGAGTATCCAGACTATGAGCAGTTGAATAAGGGTGCCGAAGGCCACAAAAGAAAAAGAGTGACTGAAATTCTGACGAAGGATGAAGAGCAACCAGCAGCAGAGAAGAAAATTCCAAAGAAAAGGAAAATATCAACTCCGAAACGGAAAATATCCAAAGAAGAGAAAACCCCCACACCGCCTTCTACTAGCGACATAGAAGAAATTTTAAAGGTAATGACTGAACCCATGCCTACGAAGCTAAGTCCACTAGGGCTCCAACTGACGAAGCTTTTTCGAAAGGTGGACGAGCCGGATCAGACGAAGACAAGCAAACCCAAGCGGCAAAGAATCATTGCGGTAACTGAAGTTATCGATAAGACGCCGCCAAGGGCGTCAATCCAAAAAACGGCAGCTGCCGAAGGTGCAGCAATTGTCGAAGGCGTAGCTTCGGGGGTCGCGGCTACCGAAGCCGCTACAGCCGAAGATACAAACTTAAAAACCACGATTACGAATATCAACAAGATTTTGGAAGACATGGCCGCGGAAGAAACTGGTGCTACTTCTGAAAAAACCATGGCCACAGTGCCTGAAAAAGGAAAAGAAATAGCCGAAGACCCTTCGGATGACGAAGCATACACTTTCCAGAACTTAGTTGGGCAAAAACTGACGAAGGAGGAAATAGAAGAACTTAAAGAATACGCCAAGTCTTGCGGGTACAAGTCAGGTGCCCTCCTATTTGGGGGTGTAGATGATGAACAACTGGGCTGCATCCGGGACTCAGCTGGGGCTAAGGTCATCGGTACTTTATCAAAGAGTATCGGTTTTCCGAAGCTGGAGTCAGACATCAGCCGCTACCGACGACAACATGTCGTTGGTAGTTTATTTTATTCTAACTTCAAGGTGAATGACTTGTTTCTTAACCTTTATTGCTTCTAATAAAAACATGACTGACGAAGGTTGTGTTTGTGTAGAGTATGCTATTGAGCAAGGCTTTGCAAATGCAGCAGGATCTTGAAGATAAAAAGCATGAAGTTATAATTGAAAATTTGGAAAACAAAATAAAGGAACAATCAGATGCTTTTGAGAAAAAGAGCTTCGAACTCCAGGCAGCCGAAGGTTTACTGGCGGAAGCTGAAGCAAAAATATTAGAACTGAACACGAAGCTTCTCCGCCAGTCTGAGCAGTTCGAACAAGAAAAACAAGATCTCAATGCAAAACTTGAAGCCGAAGCTCAGCAAAATTCGGATTTGAGAAAATTATTGACAAATCTTCAAGAAAAATGCCTAGAATTTAGCAACAAGTGCATTCAGCGACTAAGAAAGATTTTTCATTCGGTTGGAGCTAGCAGCGAAAAATTTACCCCCTCAGCTGAAGACCTACCACAAACCTTCGAACACATTGAGGGGGAAATTGACGAGCTCGACGAAGTCATAGCTGGGCATGGTGATTTCTGTGCCTGGGTAGCTTCTCGAGGGACTGCTGCAGCCTTCATGAAGGCTGGCTGTGAACATGGAAAAGTTGTTAACAGACCCACCTTCGCCTTATCTCCATCAATCCTGGATGATATGCCTGACCTTGCCCGAAGTATCTCCAACAGATTTATAAAAATGATATGGACAAAAGGCGGGCGGGAGAAGGCTGGAGATGAAGCACGAAGCCATCTTGAACCAGTAAGAGATAATACTTCGTACTTACCTTTTTCTTTGCACTTGATTTTTACTCACGGTTCCTTGATTTATGTAGGATGACGAAGGTGAAGATGATGCCTAAATTATGTCGTCGAAGCTGAAACTTAATGAAGATCAGTAGAAGTGTACTGTAGGAAAACTCAGGATATTTTTGTAACAATCCTTGTAAATACAACTAGACTATCTTCAAGGAACTTTGTACATACCTTGCAATGTATTCTTACCCTCTGCTTGAAGCGCTTTGATGTGGACGAAACCAGTATTTTGAGCCGAAGGCGAAAAACACCTTCCCTTCTTTTCGTACACAACGAAGCTTTAAAAGGTCGCTTCCTCTTTTTGCCGAAGCTTTGCTTTTTTGTACATGAAAACTACTTCTCCTTTCTGCCGAAGCTTTTCTTTACAAAACATAAAAAACTACTTCTCTTTTCTGCCGAAGCTTTCCTTTACATGACAAAACATAAAAGACTACTACTCTTTTGCACAACGATTCGTAAAAATCCAGTTCTCCCTTATACTGAACTTTTCCTTGTGCCAAAGCAACGGAACTTTTCACTTTTGCACACAACATAGCGTAATAAGTCATAAAAGGTACTTCTCCGAAGCTTTTTTGCCGAAGCAGCCACTTGGGAACACAAATGCTATGAATGAATGCTTATGCATGCGAATGTTATGATGTAATGTAATGCACGAATGAATGTCCGAAGCATATGTCCGAAGCCATATTGTCAGCCATTACTTGAAAACAACCACACATTAGCTCTGCATTCCCTTAGGAACGACTTTGGAGCTTCTTCGCCTCTTACTTAGGCAATATCAGCGTTGACTTTTCGCTGTAAGCTCTGCATCCCCTTAGGGACGTCTTTGGAGCTTCTTCGTCTTTTACTTAGACGGTATAAGCTCTGCATTCCCTTGGGAACGTCTTTGGAGCTTCTTCGTCTTTTACTTAGACGGTATAAACTCTGCATTCCCTTAGGAACGTCTTTGGAGTTTCTTCGCCTTTTACTTAGGCGGTATAAGCTCTGCATTCCCTTGGGAACGTCTTTGGAGCTTCTTCTCTTTTTTCTTTTTCAGTTTCTGCACTCGATGGTGCGTTCTCAGCTGTTACATTTACATTTTTTGGGGGATTTCGCTCTTATAAGACTAAAAAAGGAAATTACACATGATGGCCCTATTAAAAACCTTTCTCCCCCTTCGGAAAGGAAAAGGGTGCCATGAAAATGAAAAGAAAAAGCATAAAAAATTACATCATATTATACATAGTATCGCCGAAGCTCATCCGCATTCCAAGACCTTGGAATTTCGTTGCCATCCATGTCCTTCAATCTGTATGATCCAGGCCTTGACGAAGATACTACTAAGAATGGTCCTTCCCATTTCAACTGTAGCTTACCCACTGTATCTGGGTTAGCCACTCTCCGAAGCACCAAGTGTCCCGGCTCAATATTTTTTAGCCGGACTTTTCTATCTCGCCATTTGACTGTTTCAGCCTGATATTTATTAATATTCTCCACGGCCTGAAGCCTGATCCCCTCTAAAGCATCTTTTTCCACAAGATAAGCATCTTCGGGGCCTGATTCTGCCGAAGCTACTACTCTTACTGACCCAGCTTTTGCTTCCTCCGGAGTTATTGCTTCGTCACCGAATAATAATTTGAATGGGGTAAAGCCTGTAGACCTTGATGTTGTTGTATTGTGGCTCCACACCACTTTGATTAACTGATCTGGCCACTTTCCCCTGGGTTGATTGAAGATTAACTTCATTATTCCTGTCATTATAATGCCGTTGGCCCTTTCAACGAGCCCATTTGACTCCGGATGCCTGACTGACGCAAAATGGATCTTCGTTCCGATTTGATTACAGAAGTCTCTGAAAGCTTCGGAGTCAAACTGCGTTCCATTATCTACAGTAATTGCCTTCGGTACCCCGAAGCGACAGACAATATTCTGCCAGAAAAACTTTTGGACAGTGGCTGAAGTTATTGTGGCCAATGGCTTCGCCTCAATCCACTTGGAAAAATACTCCACAGCCACTATAACATATTTTAGATTCCCTTGAGCCGGTGGTAATGGGCCCAACAAGTCAAGGCCCCACCTTTGCAATGGCCAGATGGGTTGTATCAGCTGTGTTAAAGACGAAGGTTGTTTTTGATCTCTTGCACATTTCTGACAACCTTCGCACTTTTGCACTAACTCCGCTGCATCCGAAGCTGCCTTCGGCCAATAAAATCCTTGGCGGAAGACTTTCCCAAGTAATGGCCTAGATCCAATGTGGGATCCACACAGGCCTGCATGTATCTCTTTCATCAACTCTATACCTTCGGCTCTAGATAAGCACTTGAGCAGCGGAGCACAAACTCCATGTTTGTATAATTCCCCTTCTATCATGACATACGGACGAGCTCTTGCCTCTATTCTTTTATTGTAAGCTTCGTCATCTGAAAGGGACTTACCCTGAAGGTAAGAGATTATTTCAGTTCTCCAATCTTCGCTGTAAACAGGAGATATGTTGAGGACTGCTCTTTCAAGGAGCTCCACTGAAGGTGCCTTTATTGTTTCGAAAAACACATCCGAGGGTAACGGCAGCCCCTGTGCCGCAGACTTAGCTAGCAAATCAGCATGCTCATTTTGTCCTCGAGGAATATTCTTGACCGAGAATCCTTCGAAGGATGCCTCGATCCTTCGGACCGTATCTAGATACTTTTCAAGCTTCGGATCTTTAGCTTTGCAACTTTTGTCAACATGACCCGAAACCACCTGGGAATCAGTTTTAAGAATTGCCCTTCTGATTCCCATTGCCTTTAATTTCCGAAGGCCCAAAAGCAGGGCTTCGTACTCAGCAATATTGTTCGTGCAGCTGAAATCAAGTCTTGCTGCGTAACAAGTTTTGACATTGGATGGTGAAACCAACACAGCAGCTGCACCTGCTCCGAAGATTCCCCAAGAGCCATCACAAAACACTGTCCACACTTCGGCATCTTTATTTGCTTCTTCATCCTTCGCCCCTGGTGTCCAGTCGGCAATGAAATCTGCCAATGCTTGAGACTGGATCGAAGATCTATGCACATAATCAATGTAAAATTCGTTGAGCTCTGCAGCCCATTTCCCAATCCGTCCAGTAGCTTCTCTATTTCTCATTATATCCTTCAACGGCTGCGAAGAAGGAACAATGATATTGTATGCCTGAAAATAATGCCGAAGCTTCCTGGATGCCATTAAAACGGCATATAATACCTTCTCCAGCTCTGTATAATTTTTCTTTGAGACACTAAGGACCTCAGATACAAAGTACACTGGAACTTGCTTCTTAAGCTGGCCATAAAGCTTCTCCTGGACAAGCGCCGCACTTACTGCTGAGTGCGAAGCTGCCACATATAACAACAGAGGAGCCCCTGGCGTTGGCGGAGTTAATGTTGTGAGATCTATCAAGTATTGCTTCAACTCTTCGAAGGCTTTTTGTTGACTTGGGCCCCATTGAAAGACTTCGGCTGACTTCAGCACCTCGAAGAATGGTAAGTTTCTTTCTGCTGATCTGGATATAAATCTGTTGAGAGATGCTAGCCTTCCTGTCAATCTTTGGGCCCCTTTTCTTGTAGTTGGTGGCTCCATTCGAAGTATAGCTTCGATTTTATTTGGATTAGCTTCGATTCCCTTTGTTGAAACTAAGCATCCAAGAAATTTACCCTTCTTTACTCCGAAGACACATTTCTCTGGATTCAGCTTCAGACCAGCTTGTCTGAAGCTGGCGAAGGTCTCCTGCAGATCAGCAATATGGTCCTCTTGCTTCGTGCTTTTGACGATAATGTCATCAACATAGGTCAACACATTTCTACCTATTTGAGACTGGAGAACCTTCGCAGTCATTCTGCTGAAACTTCCTCCAGCGTTTTTGAGCCCCTCAGGCATCCGAAGATAGCAATACGTGCCACTTGGAGTTATGAAGCTAGTTTTCGGCTCATCTTCCTTTTTCATCCAGATTTGATGATATCCTGAGTAACAGTCCAAGAGACTCATGAGCTCTGAAGAAGCTGCTGCATCGACTAGAGAGTCTATCCTTGGCAACGGGAATTCGTCCTTCGGACAAGCTTTGTTGAGATCTGTGAAATCGATACACATTCTCCACTTGCCATTGGCCTTCTTCACCATAACAGTGTTAGCTAGCCACTCTGGGTACTTCACTTCTCTGATAACTCCTGCACTGAGGAGTCTTTTTACTTCGTTGCGAGCCCCTTCGGCCTTGTCATCAGACATTTTCCGAAGCCTCTGCTTTCGGGGTCTAAAGGATGGGTCAACATTGAGCGAATGTTCAATAACATCCCGGTTTACTCCACAGAGATCATTAGCCGACCATGCAAAAACATCTTTGTTGTTGAATAAAAACCTTATCAAGGTTTTCTCCTGGTCTTCAGATAACTGCGAGCCCAACAGCACCTTCTGATCTGCTATGTCTTCGCACAATAGCATGGGCTTCGGCTGATCAGCCGAAGCTGCTTTTTCCCTCCTGAACTTGTACTGTTCACAAGCTTCAACTCCATCTATATTATGGATTGCCTTGGAATCAGTCCAGCTTCCTTCGGCCCTTCTGGCAGCTTCCTGACTCCCATGAATAGCAATAGGCCCTTGGTCCGAAGGTATCTTCATGCAGAGATAAGCTGGGTGAAGAATTGCTTCAAAAGCATTTAGGGTACCACGACCAATGATGGCGTTGTAGGGGTATTCCATGTCAACAATATCAAACACAATTTGCTCAGTCCTTGTGTTATTAACAAATCCGAAGGTTACCGGCATGGTAATCTTCCCGAGTGCCACAATCTGTCGCCCTCCGAAGCCACAAAGAGGGTGCGTAGCATCATGAATCTTGTCTTCAGGCTCTTGCATCTGTCTGAAGGCTTTGGCAAATATGATGTCAGCTGCACTGCCTGTGTCGACCAAGACATTGTGGACCAGAAATCCTTTGATAACACAAGAGATAACCATGGCATCATTGTGTGGGTAATCTTTAAGCTGAAGGTCCTCTTGGGAGAAGGTAATTGGAATGTGAGACCATTTTGACTTAATGAAGGGTCCCTGCACGCCAACATGCTGCACCCTTCTCTGAGCCTCCTTCTTCTGCCTTTTGTTAGCTGGCTCTGAGCAAGAACCGCCTGTTATCGGGAGCACCAGCTTCGAAGCCGAAGCAGCTCCAGCTTGAGTGTTGAACGAAGCCATCAGCTCAGAAAGGTGGAAGTGAGTTGACCGGAGGTGGGCGCCAATGTTGGGGACTTGTTCTCAAATGCT . PASS ChrB=chr2;DupType=copyloss;END=11964;EndB=71754416;StartB=71745602;VarType=SR
My vcf after combine:
##fileformat=VCFv4.2
##contig=<ID=chr2,length=244442276>
##INFO=<ID=ACO,Number=A,Type=String,Description="Allele call-set origin(s) (<call-set>:...)">
#CHROM POS ID REF ALT QUAL FILTER INFO
chr2 3106 . C CTTCGGTCCTGCGGAAGGCAAAGGTACAAGCGTGATGCGAAAGCAAATGACAGGTTCACGTGAACAGTACAGAGGTACTGTTCATCTATTTATAGGCACAGGTCGCAGCCTGTGACAAATTACAATTATGCCCCTTGCGAAAGTTTATAGCATTAACTCAGACTCATATGTATAAAAAGGTCATTCTATCTCTATGTCGGTTTAAAAACGCCGAAGCTCCATGAAAAGGGACCTTCGGCCATCTCTTGGAGACGACTTCAGCCGAAGCTGCTTCTTCATGTGAGACCTTCGGCGCACCGAAGCACGACCCCAACAGTAGCCCCTTTCGCGGTGCTAGATCGTTCTTCGTAACGAGCTTGACCCGTGAAAAAAGCCTCTTCAGCTTCGGGAAGCCGAAGGTCCAAAAAACACCTTCCCTGAGCTCGTTGCGGAGAAACGATCCGACTTCCGAGCGCGTGTCGGTCCCACCTTGCAGAGTTACTGTTTGATCCTTGCGGTCCACTGCGCAGCGGGTACAAGTTACGGCGCGCCTGGTGTAACAATTCCGCCGCTTCGCCTTGTTTCCTGCAGTACTATATAAACAAGCAGGTAGGTGTAAAGTTACCACAGCATTCATTGCTATTTGCACTGTTTTGCTGCCGAAATTTTCCATCATAGCCGAAGCTTAAATCCCAAAATCGAACGAAGGTCCGTCTCGACACTTGCTTCGTCAGAAAGAAGAGCTTCGGAGAGAAGAAAAAAGTAAAAAGTTTCTGACTTCCCAAACTTAAAATCAAATGGCGAGAATTCGATCTACTGCCAAAGTTGTACGCGAGGGAGACGAAGCCGAAGGTTCAAACACTGTGCCCATCTCCGAAGCGATGCAGCGCTCCGGTCTAGTGGCTGCGGAAGAGAGGCCTGGTACCGAAGCAAACCCGACAACAGCCGAAGAAGAAAACATTGATGGGACTGACTCCGGAGATGACTACCACATGTCTACACCCAGCAAGCCCAGTCACCTGGATTTTGGAAAATCAACTGTTTCAAAGGCTGACCTTGCGAAGATGATAAAGGCAGGTTTTTTCAAAGAAGATCAAAAAAAGCTACTTCGCTTCGGAGGAGAGGAGACTACCCCGAAGCCAGAGAAGGATGAGATTGTAATTTTCAAAAGCTTTTTAAAAGCTGGGCTGAGATTTCCTCTTCATGGAATTATTGGAGATGTGTTGCAAAAGTTTGGCATTTATTTTCACCAATTGACTCCTAACGCCATTGTTAGGCTTAATGTTTATATTTGGGCTCTCCGAAGCCAAGCTGTGGAACCGTTTGCCGACAGCTTCTGCCGAGCGCACGAATTACATTACCAAACGAAGGCCAGAGCAGACGGACTACATGATAATTTCGGCTGTTACAATTTTGCCTACCGGAAGACAACAAAGTGTCCTGTTATCAGCTACCGGAGCAAATGGCCAGCAGGCTGGAAGTCTGAGTGGTTCTACGTAAAAGTTGACGAAGACAGAGAAAAATTGATACAAAGTCCTCTGGAATTAATCTTCGGAGAGACAAGGCCACACTGCCACATCGGCGATTTAAAGGGTCCTACCTGGGCCGCTCTGGGTGAATTCGAAATTATTTCAGAACATATTGGCACCAGGGATCTGGTTCAGGAATTTTTGGCATTCAGAGTTTTCCCTACTTTAAAAGAGTGGGAGATGCCGAAGCTGGAGGGAGAGAAGAAGGAGGGGGAGCTTGTTCGTCTGCCTTATCACTTTAAATTCAAGAAGTACTTTAAGAAACCCTGCAAAGAGTGGTTGGACACAGTTGAGACAATGTGCAATGAAATCTTGGGGAACTACTCCAAAAAGGAGGATCAATTAATGACAGCAGCCTTCGGCACCCGACCGAAGCGAAGGCTGAACCGAGTATTCGATGCCCTGGGCTTCGAGTATCCAGACTATGAGCAGTTGAATAAGGGTGCCGAAGGCCACAAAAGAAAAAGAGTGACTGAAATTCTGACGAAGGATGAAGAGCAACCAGCAGCAGAGAAGAAAATTCCAAAGAAAAGGAAAATATCAACTCCGAAACGGAAAATATCCAAAGAAGAGAAAACCCCCACACCGCCTTCTACTAGCGACATAGAAGAAATTTTAAAGGTAATGACTGAACCCATGCCTACGAAGCTAAGTCCACTAGGGCTCCAACTGACGAAGCTTTTTCGAAAGGTGGACGAGCCGGATCAGACGAAGACAAGCAAACCCAAGCGGCAAAGAATCATTGCGGTAACTGAAGTTATCGATAAGACGCCGCCAAGGGCGTCAATCCAAAAAACGGCAGCTGCCGAAGGTGCAGCAATTGTCGAAGGCGTAGCTTCGGGGGTCGCGGCTACCGAAGCCGCTACAGCCGAAGATACAAACTTAAAAACCACGATTACGAATATCAACAAGATTTTGGAAGACATGGCCGCGGAAGAAACTGGTGCTACTTCTGAAAAAACCATGGCCACAGTGCCTGAAAAAGGAAAAGAAATAGCCGAAGACCCTTCGGATGACGAAGCATACACTTTCCAGAACTTAGTTGGGCAAAAACTGACGAAGGAGGAAATAGAAGAACTTAAAGAATACGCCAAGTCTTGCGGGTACAAGTCAGGTGCCCTCCTATTTGGGGGTGTAGATGATGAACAACTGGGCTGCATCCGGGACTCAGCTGGGGCTAAGGTCATCGGTACTTTATCAAAGAGTATCGGTTTTCCGAAGCTGGAGTCAGACATCAGCCGCTACCGACGACAACATGTCGTTGGTAGTTTATTTTATTCTAACTTCAAGGTGAATGACTTGTTTCTTAACCTTTATTGCTTCTAATAAAAACATGACTGACGAAGGTTGTGTTTGTGTAGAGTATGCTATTGAGCAAGGCTTTGCAAATGCAGCAGGATCTTGAAGATAAAAAGCATGAAGTTATAATTGAAAATTTGGAAAACAAAATAAAGGAACAATCAGATGCTTTTGAGAAAAAGAGCTTCGAACTCCAGGCAGCCGAAGGTTTACTGGCGGAAGCTGAAGCAAAAATATTAGAACTGAACACGAAGCTTCTCCGCCAGTCTGAGCAGTTCGAACAAGAAAAACAAGATCTCAATGCAAAACTTGAAGCCGAAGCTCAGCAAAATTCGGATTTGAGAAAATTATTGACAAATCTTCAAGAAAAATGCCTAGAATTTAGCAACAAGTGCATTCAGCGACTAAGAAAGATTTTTCATTCGGTTGGAGCTAGCAGCGAAAAATTTACCCCCTCAGCTGAAGACCTACCACAAACCTTCGAACACATTGAGGGGGAAATTGACGAGCTCGACGAAGTCATAGCTGGGCATGGTGATTTCTGTGCCTGGGTAGCTTCTCGAGGGACTGCTGCAGCCTTCATGAAGGCTGGCTGTGAACATGGAAAAGTTGTTAACAGACCCACCTTCGCCTTATCTCCATCAATCCTGGATGATATGCCTGACCTTGCCCGAAGTATCTCCAACAGATTTATAAAAATGATATGGACAAAAGGCGGGCGGGAGAAGGCTGGAGATGAAGCACGAAGCCATCTTGAACCAGTAAGAGATAATACTTCGTACTTACCTTTTTCTTTGCACTTGATTTTTACTCACGGTTCCTTGATTTATGTAGGATGACGAAGGTGAAGATGATGCCTAAATTATGTCGTCGAAGCTGAAACTTAATGAAGATCAGTAGAAGTGTACTGTAGGAAAACTCAGGATATTTTTGTAACAATCCTTGTAAATACAACTAGACTATCTTCAAGGAACTTTGTACATACCTTGCAATGTATTCTTACCCTCTGCTTGAAGCGCTTTGATGTGGACGAAACCAGTATTTTGAGCCGAAGGCGAAAAACACCTTCCCTTCTTTTCGTACACAACGAAGCTTTAAAAGGTCGCTTCCTCTTTTTGCCGAAGCTTTGCTTTTTTGTACATGAAAACTACTTCTCCTTTCTGCCGAAGCTTTTCTTTACAAAACATAAAAAACTACTTCTCTTTTCTGCCGAAGCTTTCCTTTACATGACAAAACATAAAAGACTACTACTCTTTTGCACAACGATTCGTAAAAATCCAGTTCTCCCTTATACTGAACTTTTCCTTGTGCCAAAGCAACGGAACTTTTCACTTTTGCACACAACATAGCGTAATAAGTCATAAAAGGTACTTCTCCGAAGCTTTTTTGCCGAAGCAGCCACTTGGGAACACAAATGCTATGAATGAATGCTTATGCATGCGAATGTTATGATGTAATGTAATGCACGAATGAATGTCCGAAGCATATGTCCGAAGCCATATTGTCAGCCATTACTTGAAAACAACCACACATTAGCTCTGCATTCCCTTAGGAACGACTTTGGAGCTTCTTCGCCTCTTACTTAGGCAATATCAGCGTTGACTTTTCGCTGTAAGCTCTGCATCCCCTTAGGGACGTCTTTGGAGCTTCTTCGTCTTTTACTTAGACGGTATAAGCTCTGCATTCCCTTGGGAACGTCTTTGGAGCTTCTTCGTCTTTTACTTAGACGGTATAAACTCTGCATTCCCTTAGGAACGTCTTTGGAGTTTCTTCGCCTTTTACTTAGGCGGTATAAGCTCTGCATTCCCTTGGGAACGTCTTTGGAGCTTCTTCTCTTTTTTCTTTTTCAGTTTCTGCACTCGATGGTGCGTTCTCAGCTGTTACATTTACATTTTTTGGGGGATTTCGCTCTTATAAGACTAAAAAAGGAAATTACACATGATGGCCCTATTAAAAACCTTTCTCCCCCTTCGGAAAGGAAAAGGGTGCCATGAAAATGAAAAGAAAAAGCATAAAAAATTACATCATATTATACATAGTATCGCCGAAGCTCATCCGCATTCCAAGACCTTGGAATTTCGTTGCCATCCATGTCCTTCAATCTGTATGATCCAGGCCTTGACGAAGATACTACTAAGAATGGTCCTTCCCATTTCAACTGTAGCTTACCCACTGTATCTGGGTTAGCCACTCTCCGAAGCACCAAGTGTCCCGGCTCAATATTTTTTAGCCGGACTTTTCTATCTCGCCATTTGACTGTTTCAGCCTGATATTTATTAATATTCTCCACGGCCTGAAGCCTGATCCCCTCTAAAGCATCTTTTTCCACAAGATAAGCATCTTCGGGGCCTGATTCTGCCGAAGCTACTACTCTTACTGACCCAGCTTTTGCTTCCTCCGGAGTTATTGCTTCGTCACCGAATAATAATTTGAATGGGGTAAAGCCTGTAGACCTTGATGTTGTTGTATTGTGGCTCCACACCACTTTGATTAACTGATCTGGCCACTTTCCCCTGGGTTGATTGAAGATTAACTTCATTATTCCTGTCATTATAATGCCGTTGGCCCTTTCAACGAGCCCATTTGACTCCGGATGCCTGACTGACGCAAAATGGATCTTCGTTCCGATTTGATTACAGAAGTCTCTGAAAGCTTCGGAGTCAAACTGCGTTCCATTATCTACAGTAATTGCCTTCGGTACCCCGAAGCGACAGACAATATTCTGCCAGAAAAACTTTTGGACAGTGGCTGAAGTTATTGTGGCCAATGGCTTCGCCTCAATCCACTTGGAAAAATACTCCACAGCCACTATAACATATTTTAGATTCCCTTGAGCCGGTGGTAATGGGCCCAACAAGTCAAGGCCCCACCTTTGCAATGGCCAGATGGGTTGTATCAGCTGTGTTAAAGACGAAGGTTGTTTTTGATCTCTTGCACATTTCTGACAACCTTCGCACTTTTGCACTAACTCCGCTGCATCCGAAGCTGCCTTCGGCCAATAAAATCCTTGGCGGAAGACTTTCCCAAGTAATGGCCTAGATCCAATGTGGGATCCACACAGGCCTGCATGTATCTCTTTCATCAACTCTATACCTTCGGCTCTAGATAAGCACTTGAGCAGCGGAGCACAAACTCCATGTTTGTATAATTCCCCTTCTATCATGACATACGGACGAGCTCTTGCCTCTATTCTTTTATTGTAAGCTTCGTCATCTGAAAGGGACTTACCCTGAAGGTAAGAGATTATTTCAGTTCTCCAATCTTCGCTGTAAACAGGAGATATGTTGAGGACTGCTCTTTCAAGGAGCTCCACTGAAGGTGCCTTTATTGTTTCGAAAAACACATCCGAGGGTAACGGCAGCCCCTGTGCCGCAGACTTAGCTAGCAAATCAGCATGCTCATTTTGTCCTCGAGGAATATTCTTGACCGAGAATCCTTCGAAGGATGCCTCGATCCTTCGGACCGTATCTAGATACTTTTCAAGCTTCGGATCTTTAGCTTTGCAACTTTTGTCAACATGACCCGAAACCACCTGGGAATCAGTTTTAAGAATTGCCCTTCTGATTCCCATTGCCTTTAATTTCCGAAGGCCCAAAAGCAGGGCTTCGTACTCAGCAATATTGTTCGTGCAGCTGAAATCAAGTCTTGCTGCGTAACAAGTTTTGACATTGGATGGTGAAACCAACACAGCAGCTGCACCTGCTCCGAAGATTCCCCAAGAGCCATCACAAAACACTGTCCACACTTCGGCATCTTTATTTGCTTCTTCATCCTTCGCCCCTGGTGTCCAGTCGGCAATGAAATCTGCCAATGCTTGAGACTGGATCGAAGATCTATGCACATAATCAATGTAAAATTCGTTGAGCTCTGCAGCCCATTTCCCAATCCGTCCAGTAGCTTCTCTATTTCTCATTATATCCTTCAACGGCTGCGAAGAAGGAACAATGATATTGTATGCCTGAAAATAATGCCGAAGCTTCCTGGATGCCATTAAAACGGCATATAATACCTTCTCCAGCTCTGTATAATTTTTCTTTGAGACACTAAGGACCTCAGATACAAAGTACACTGGAACTTGCTTCTTAAGCTGGCCATAAAGCTTCTCCTGGACAAGCGCCGCACTTACTGCTGAGTGCGAAGCTGCCACATATAACAACAGAGGAGCCCCTGGCGTTGGCGGAGTTAATGTTGTGAGATCTATCAAGTATTGCTTCAACTCTTCGAAGGCTTTTTGTTGACTTGGGCCCCATTGAAAGACTTCGGCTGACTTCAGCACCTCGAAGAATGGTAAGTTTCTTTCTGCTGATCTGGATATAAATCTGTTGAGAGATGCTAGCCTTCCTGTCAATCTTTGGGCCCCTTTTCTTGTAGTTGGTGGCTCCATTCGAAGTATAGCTTCGATTTTATTTGGATTAGCTTCGATTCCCTTTGTTGAAACTAAGCATCCAAGAAATTTACCCTTCTTTACTCCGAAGACACATTTCTCTGGATTCAGCTTCAGACCAGCTTGTCTGAAGCTGGCGAAGGTCTCCTGCAGATCAGCAATATGGTCCTCTTGCTTCGTGCTTTTGACGATAATGTCATCAACATAGGTCAACACATTTCTACCTATTTGAGACTGGAGAACCTTCGCAGTCATTCTGCTGAAACTTCCTCCAGCGTTTTTGAGCCCCTCAGGCATCCGAAGATAGCAATACGTGCCACTTGGAGTTATGAAGCTAGTTTTCGGCTCATCTTCCTTTTTCATCCAGATTTGATGATATCCTGAGTAACAGTCCAAGAGACTCATGAGCTCTGAAGAAGCTGCTGCATCGACTAGAGAGTCTATCCTTGGCAACGGGAATTCGTCCTTCGGACAAGCTTTGTTGAGATCTGTGAAATCGATACACATTCTCCACTTGCCATTGGCCTTCTTCACCATAACAGTGTTAGCTAGCCACTCTGGGTACTTCACTTCTCTGATAACTCCTGCACTGAGGAGTCTTTTTACTTCGTTGCGAGCCCCTTCGGCCTTGTCATCAGACATTTTCCGAAGCCTCTGCTTTCGGGGTCTAAAGGATGGGTCAACATTGAGCGAATGTTCAATAACATCCCGGTTTACTCCACAGAGATCATTAGCCGACCATGCAAAAACATCTTTGTTGTTGAATAAAAACCTTATCAAGGTTTTCTCCTGGTCTTCAGATAACTGCGAGCCCAACAGCACCTTCTGATCTGCTATGTCTTCGCACAATAGCATGGGCTTCGGCTGATCAGCCGAAGCTGCTTTTTCCCTCCTGAACTTGTACTGTTCACAAGCTTCAACTCCATCTATATTATGGATTGCCTTGGAATCAGTCCAGCTTCCTTCGGCCCTTCTGGCAGCTTCCTGACTCCCATGAATAGCAATAGGCCCTTGGTCCGAAGGTATCTTCATGCAGAGATAAGCTGGGTGAAGAATTGCTTCAAAAGCATTTAGGGTACCACGACCAATGATGGCGTTGTAGGGGTATTCCATGTCAACAATATCAAACACAATTTGCTCAGTCCTTGTGTTATTAACAAATCCGAAGGTTACCGGCATGGTAATCTTCCCGAGTGCCACAATCTGTCGCCCTCCGAAGCCACAAAGAGGGTGCGTAGCATCATGAATCTTGTCTTCAGGCTCTTGCATCTGTCTGAAGGCTTTGGCAAATATGATGTCAGCTGCACTGCCTGTGTCGACCAAGACATTGTGGACCAGAAATCCTTTGATAACACAAGAGATAACCATGGCATCATTGTGTGGGTAATCTTTAAGCTGAAGGTCCTCTTGGGAGAAGGTAATTGGAATGTGAGACCATTTTGACTTAATGAAGGGTCCCTGCACGCCAACATGCTGCACCCTTCTCTGAGCCTCCTTCTTCTGCCTTTTGTTAGCTGGCTCTGAGCAAGAACCGCCTGTTATCGGGAGCACCAGCTTCGAAGCCGAAGCAGCTCCAGCTTGAGTGTTGAACGAAGCCATCAGCTCAGAAAGGTGGAAGTGAGTTGACCGGAGGTGGGCGCCAATGTTGGGGACTTGTTCTCAAATGCT . . ACO=SIRY
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I see why this is happening now. This is actually not a bug. Basically, combine
will trim all right-side bases that are the same between REF and ALT. The variant itself is still the same, but it is now simpler and less redundant. Here is a example:
chr1 1 . CAC CACAC
after combine:
chr1 1 . C CAC
Here AC is trimmed from both the REF and ALT allele.
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Alright, thanks vary much for your reply, you solved my question.
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Related Issues (20)
- [feature request] Genotyping more than 500 samples HOT 3
- Question of the format of VCF file for BayesTyper. HOT 2
- A question about convertAllele.
- Genotyping 500 samples
- Genotyping for the inversions HOT 2
- A question about VCF format of results from the 'genotype' function. HOT 1
- Identifying SV type from output HOT 1
- when cmake, Could NOT find Boost (missing: Boost_INCLUDE_DIR iostreams program_options system filesystem serialization) HOT 1
- Where are the test cases HOT 1
- how to run bayestyper HOT 2
- Classifying kmers error with bayesTyper 1.4.1 and 1.5 HOT 1
- Questions on data bundle and SV genotyping HOT 1
- how to get test case
- downloading variation priors fails HOT 3
- how to generate test cases
- genotype failed: Assertion `parameters.first > 0' failed. HOT 3
- What is the open source protocol for bayesTyper? HOT 1
- If executed multiple times, will the result of the data generated be the same each time? HOT 5
- With bayestyper genotyping SV, the genotype rate decreases as the depth of sample sequencing increases.
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