Related Issues (20)
- Multiple alignment manipulation HOT 3
- Inconsistent when aligning distinct sequence types HOT 1
- Get reference and query from `PairwiseAlignment` HOT 2
- `ref2seq` returns a position outside of the sequence length
- What does the two integer fields in `Alignment` do? HOT 1
- The API of accessing fields of BioAlignments
- Bug in `OverlapAlignment` HOT 1
- OP_BACK has no use? HOT 2
- Lack of an article to cite BioAlignments.jl HOT 1
- TagBot trigger issue HOT 5
- `AlignmentAnchor` method signature HOT 1
- Extract start and end positions from a PairwiseAlignment HOT 1
- Do these methods work and are they tested? HOT 1
- Alignment of 2 LongAminoAcidSeq with AffineGapScoreModel from docs goes out of bounds HOT 1
- Weird error with `AffineGapScoreModel()`
- Refactor tests
- Outdated documentation for SAM/BAM in BioAlignments is first hit in search HOT 6
- Friendly request to `@deprecate` API changes via semver HOT 2
- Add a `cigar` method and `BioAlignments.Alignment` constructor for XAM.jl optimisation
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from bioalignments.jl.