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Write converter for semmeddb dump about kgx HOT 4 CLOSED

biolink avatar biolink commented on August 16, 2024
Write converter for semmeddb dump

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cmungall avatar cmungall commented on August 16, 2024

From: Ebrahim Bagheri [...]
To: obo-discuss [email protected]
Subject: [obo-discuss] UMLS to DBpedia Mappings
Date: Thu, 19 Apr 2018 05:28:59 -0700 (PDT)

We are pleased to announce our work on mapping between UMLS and DBpedia
concepts has been published in the “Journal of the American Medical
Informatics Association” (https://doi.org/10.1093/jamia/ocy021) with the
full dataset, online browser, and RESTful API available at
http://denote.rnet.ryerson.ca/umlsMap/. This dataset includes 221 690
“exact match” relations, 26 276 “close match”, and 6 784 322 “see also”
pairings. We hope you find this useful in facilitating effective
interchange and integration between general knowledge databases (DBpedia)
and those from (bio)medical ontologies (UMLS).

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cmungall avatar cmungall commented on August 16, 2024

@stuppie has done the bulk of the work here: https://github.com/stuppie/semmed-biolink

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cmungall avatar cmungall commented on August 16, 2024

@stuppie @andrewsu how are we doing on this?

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stuppie avatar stuppie commented on August 16, 2024

We have the first iteration of a Biolink-compliant version of semmeddb here http://34.229.55.225:7474/browser/
It is biolink-compliant as of a week ago.
But.. I'm not sure what a "converter" is ?

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