biomguler Goto Github PK

adultcode

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

awesome-multitrait-gwas

List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS

awesome-r

A curated list of awesome R packages, frameworks and software.

bioc-intro

Bioconductor data science introduction

biomguler

Config files for my GitHub profile.

biomguler.github.io

The IMMEnSE Consortium Website

book

clonal-hematopoiesis

This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes and consequences of clonal hematopoiesis" (https://www.medrxiv.org/content/10.1101/2022.01.06.22268846v1).

cmplot

📊 Circular and Rectangular Manhattan Plot

datasharing

The Leek group guide to data sharing

epistasisdetection

fastreer

Phylogenetic, Distance and Other Calculations on VCF and Fasta Files

fiuncho

g-waspiper

This repository is my collection of pipelines for basic GWAS analysis, written in R to simplify, please cite original tools/approaches referred in the pipelines.

gattacanet2

gcpbayes-pipeline

gemma

Genome-wide Efficient Mixed Model Association

genotools

A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps, ancestry estimation. UNDER DEVELOPMENT

glow

An open-source toolkit for large-scale genomic analysis

gps_cpp

C++ code for calculating the GPS statistic.

gsa-mixer

gwa_tutorial

A comprehensive tutorial about GWAS and PRS

gwas_scripts

Codebook from my GWAS cookbook

gwaslab

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/

hodgkins

Human disease network based on GWAS loci

hybridgwais

Fast epistasis screening software using hardware accelerators (incl. FPGA and GPU)

i-ldsc

Code and simulations using interaction LD score regression

mulinlab-pip

mulinlab bioinformatics pipelines for reproducible, efficient and convenient bioinformatics research.

multi-ancestry-pwmr

Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper