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beth

Beth-Framework for Topology-Testing in Java.

biom

BIOlogical data Management Tool

cepla

Pairwise comparisons of proteins based on their epitope landscape profiles

conda-recipes

Conda recipes

data4travis

Data for testing in-house tools with travis-ci

dcc2

Dynamic core orthologs compilation tool

digital_competence

fas

FAS - Tool for Feature Architecture Similarity calculation

fcat

Python package for fCAT, a feature-aware completeness assessment tool

fdog

Feature-aware Directed OrtholoG search

g_nom

hamstr

Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

matt

MATT

ncortho

Targeted ortholog search for miRNAs

phyloprofile

A phylogenetic profile analysis tool

phyloprofile-data

Data files for PhyloProfile tool

phyloprofile_oneseq

in-house version of PhyloProfile

phyloprofilecorona

Lite version of PhyloProfile for corona data

phyloprofiledata

The PhyloProfileData package provides a collection of datasets to accompany the PhyloProfile package

phylorbf

phylosophy

R Toolkit for generating and exploring phylogenetic profiles

prottrace

A simulation based framework to estimate the evolutionary traceability of protein.

python-novice-inflammation

based on https://github.com/swcarpentry/python-novice-inflammation

revolver

REvolver is a protein sequence evolution simulation tool keeping constraint protein domains information.

rscaffolder

Multi-Reference Assisted Bacterial Genome Scaffolder

sharingiscaring

spice

Tool that utilizes FAS on entire sets of transcripts to assess the impact of alternative splicing on proteome function.

syntgeny

taxaminer

Interactive exploration of biodiverse genome assemblies

taxaminer-dashboard

Web-based visualization and exploration of taXaminer datasets