Comments (3)
Thanks for giving me a kick under the butt! It was necessary.
And also thanks for the list of milestones. I've addressed all tasks for now and released spectrum_utils version 0.4.0. 🎉
I can still make improvements to some of these tasks. For example, the documentation now is still all static markdown pages with the code examples (although fully functional) run externally, rather than writing the relevant pages as notebooks so that the examples are automatically executed.
That doesn't change the functionality, or even the look, at the moment though. So to provide the new functionality to you and other users, I've published the new release. Documentation updates (and possibly some bug fixes as needed) will be added in patch versions.
The only milestone that was not explicitly addressed is adding documentation building to the GitHub Actions, because it's doen automatically by readthedocs.
from spectrum_utils.
WOW, to be honest my I was expecting some discussion or even delegating tasks :P
Thank you so much for the hard work!
from spectrum_utils.
The new release was long overdue to be honest. I think it has some nice new functionality, but I'm always to receive feedback.
from spectrum_utils.
Related Issues (20)
- [Feature request] Diagnostic information when a wrong mass mode is used HOT 1
- [Bug] Unpinned matplotlib version leads to unexpected results HOT 4
- Urlencode USI
- Unable to install in python 3.11 HOT 1
- Fix annotation of fragments with isotopic peaks
- 'MsmsSpectrumJit' object has no attribute 'annotate_proforma' HOT 2
- Update GNPS USI resolver to GNPS2 HOT 2
- function: noise peak removal HOT 1
- ValueError: Unknown precursor m/z from USI. Specify the precursor m/z directly. HOT 2
- Matplotlib Version HOT 2
- Manual fragment annotation (in version 0.4.2) HOT 2
- Can't successfully plot an annotated spectrum HOT 1
- annotate using custom fragment list HOT 3
- Get a less rounded mz_delta value in ppm for annotations? HOT 1
- Annotating modified lysine Immonium NH3 neutral loss HOT 4
- Deprecated dependency
- Update XLMOD location
- Lark-Cython for faster grammar parsing
- Cross-link spectra annotation HOT 1
- fastobo make difficult to use the package outside linux HOT 3
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from spectrum_utils.