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autotcr

Repository for the AutoTCR scripts. AutoTCR facilitates automated processing and analysis of next generation sequencing T cell receptor data

benm1215.github.io

Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

cmv-serology

data and scripts of CMV cross-sectional serological study

cmv_vk_modelling

Stan CMV viral kinetic models

dagster-university-dec-23

Code for the Dagster University course (December 2023)

example-models

Example models for Stan

fastai-v3

My code for the fastai-v3 course

medgan

Generative adversarial network for generating electronic health records.

practicaldeeplearningforcoders-2022

My implementation of the material from Practical Deep Learning For Coders (2022, fast.ai).

stan-hands-on-answers

3 hands-on R notebooks covering basic linear regression, fitting a model to data simulated from an exponential function, and fitting a differential equation model to data simulated from an exponential function. These exercises were delivered during an introduction to nonlinear mixed effects modelling workshop at the Great Ormond Street Institute of Child Health.

tcr_analysis

TCR analysis scripts, Gini coefficient hypothesis testing, TCR subsampling alorithm

tcr_phmms

Profile hidden Markov modelling of TCR data

tgan

Generative adversarial training for synthesizing tabular data

udacity-intro-pytorch