blekhmanlab Goto Github PK
Name: Blekhman Lab
Type: Organization
Bio: Microbiome research at the University of Chicago
Twitter: blekhman
Location: United States of America
Blog: http://blekhmanlab.org
Blekhman Lab's Projects
biomehorizon
Plot microbiome time series in parallel
biorxiv_countries
Code repository for "International authorship and collaboration in bioRxiv preprints"
compendium-manager
Metadata ingest service
compendium_v1
Code associated with the first publication describing the Human Microbiome Compendium
compendium_website
Website for the Human Microbiome Compendium
docker_dada2
Docker convenience image containing R and the DADA2 package (plus dependencies), used for processing amplicon data.
hominid
Hominid: host-microbiome interaction identification
host_gene_microbiome_interactions
Analysis framework for integrating gut microbiome and host gene expression data
milk_infant_microbiome
Project on breast milk and infant gut microbiome
panlingua
Multilingual preprint search tool for bioRxiv
primates
This repository contains scripts related to the publication "Interspecies variation in hominid gut microbiota controls host gene regulation."
rxivist
API providing access to papers and authors scraped from biorxiv.org
rxivist_spider_biorxiv
Web crawler that indexes preprints posted to bioRxiv.org and medRxiv.org.
rxivist_web
Web application for Rxivist, the site that makes it easier to find the most talked-about papers on bioRxiv.org
snakemake-template
Quickstart for building out a new snakemake pipeline
universal_microbiome_h2
Files and R script for Gut microbiome heritability is near-universal but environmentally contingent
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